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							| @@ -16,7 +16,10 @@ http://stackoverflow.com/users/4290753/once | ||||
| - [Awk](#awk) | ||||
| - [Xargs](#xargs) | ||||
| - [Find](#find) | ||||
| - [Loops](#loops) | ||||
| - [Download](#download) | ||||
| - [Others](#others) | ||||
| - [System](#system) | ||||
|  | ||||
| ##Grep | ||||
| #####extract text bewteen words (e.g. w1,w2) | ||||
| @@ -405,6 +408,56 @@ if no subdirectory | ||||
| //M for MB, etc | ||||
|  | ||||
|  | ||||
| ##Loops | ||||
| [[back to top](#handy-bash-oneliner-commands-for-tsv-file-editing)] | ||||
| #####while loop, column subtraction of a file (e.g. a 3 columns file) | ||||
|      | ||||
|     while read a b c; do echo $(($c-$b));done < <(head filename) | ||||
| //there is a space between the two '<'s | ||||
|  | ||||
| #####while loop, sum up column subtraction | ||||
|      | ||||
|     i=0; while read a b c; do ((i+=$c-$b)); echo $i; done < <(head filename) | ||||
|  | ||||
| #####if loop | ||||
|      | ||||
|     if (($j==$u+2)) | ||||
| //(( )) use for arithmetic operation | ||||
|      | ||||
|     if [[$age >21]] | ||||
| //[[ ]] use for comparison | ||||
|  | ||||
| #####for loop | ||||
|      | ||||
|     for i in $(ls); do echo file $i;done | ||||
|  | ||||
|  | ||||
|  | ||||
| ##Download | ||||
| [[back to top](#handy-bash-oneliner-commands-for-tsv-file-editing)] | ||||
| #####download all from a page | ||||
|      | ||||
|     wget -r -l1 -H -t1 -nd -N -np -A mp3 -e robots=off http://example.com | ||||
|  | ||||
| //-r: recursive and download all links on page | ||||
|  | ||||
| //-l1: only one level link | ||||
|  | ||||
| //-H: span host, visit other hosts | ||||
|  | ||||
| //-t1: numbers of retries | ||||
|  | ||||
| //-nd: don't make new directories, download to here | ||||
|  | ||||
| //-N: turn on timestamp | ||||
|  | ||||
| //-nd: no parent | ||||
|  | ||||
| //-A: type (seperate by ,) | ||||
|  | ||||
| //-e robots=off: ignore the robots.txt file which stop wget from crashing the site, sorry example.com | ||||
|  | ||||
|  | ||||
| ##Others | ||||
| [[back to top](#handy-bash-oneliner-commands-for-tsv-file-editing)] | ||||
| #####remove newline / nextline | ||||
| @@ -483,7 +536,7 @@ or | ||||
|      | ||||
|     echo 'hihi' >>filename | ||||
|  | ||||
| #####make BEEP found | ||||
| #####make BEEP sound | ||||
|      | ||||
|     speaker-test -t sine -f 1000 -l1 | ||||
| set beep duration | ||||
| @@ -649,6 +702,65 @@ or | ||||
|     file=${1%.*} | ||||
| //remove string after a "." | ||||
|  | ||||
| #####search from history | ||||
|      | ||||
|     Ctrl+r | ||||
|  | ||||
| #####python simple HTTP Server | ||||
|      | ||||
|     python -m SimpleHTTPServer | ||||
|  | ||||
| #####variables | ||||
|      | ||||
|     {i/a/,} | ||||
| e.g. replace all | ||||
|      | ||||
|     {i//a/,} | ||||
| //for variable i, replace all 'a' with a comma | ||||
|  | ||||
| #####read user input | ||||
|      | ||||
|     read input | ||||
|     echo $input | ||||
|  | ||||
| #####generate sequence 1-10 | ||||
|      | ||||
|     seq 10 | ||||
|  | ||||
| #####sum up input list (e.g. seq 10) | ||||
|      | ||||
|     seq 10|paste -sd+|bc | ||||
|  | ||||
| #####find average of input list/file | ||||
|      | ||||
|     i=`wc -l filename|cut -d ' ' -f1`; cat filename| echo "scale=2;(`paste -sd+`)/"$i|bc | ||||
|  | ||||
| #####generate all combination (e.g. 1,2) | ||||
|      | ||||
|     echo {1,2}{1,2} | ||||
| //1 1, 1 2, 2 1, 2 2 | ||||
|  | ||||
| #####generate all combination (e.g. A,T,C,G) | ||||
|      | ||||
|     set = {A,T,C,G} | ||||
|     group= 5 | ||||
|     for ((i=0; i<$group; i++));do | ||||
|     repetition=$set$repetition;done | ||||
|     bash -c "echo "$repetition"" | ||||
|  | ||||
| #####read file content to variable | ||||
|     foo=$(<test1) | ||||
|  | ||||
| #####echo size of variable | ||||
|     echo ${#foo} | ||||
|  | ||||
| #####array | ||||
|     declare -A array=() | ||||
|  | ||||
| #####send a directory | ||||
|     scp -r directoryname user@ip:/path/to/send | ||||
|  | ||||
|  | ||||
|  | ||||
|  | ||||
|  | ||||
|   | ||||
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