Drezil/quarto
1
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity

added doi

Browse Source
This commit is contained in:
Nicole Dresselhaus
2025-07-31 12:59:04 +02:00
parent eb2d14ba98
commit deb3fc9b02
42 changed files with 3811 additions and 3449 deletions
Download Patch File Download Diff File Expand all files Collapse all files

73
dist/Writing/Obsidian-RAG.html vendored
View File

@ -2,7 +2,7 @@
<html xmlns="http://www.w3.org/1999/xhtml" lang="de" xml:lang="de"><head>
<meta charset="utf-8">
<meta name="generator" content="quarto-1.7.23">
<meta name="generator" content="quarto-1.8.17">
<meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">
@ -52,17 +52,19 @@ div.csl-indent {
<meta name="quarto:offset" content="../">
<script src="../site_libs/quarto-html/quarto.js" type="module"></script>
<script src="../site_libs/quarto-html/tabsets/tabsets.js" type="module"></script>
<script src="../site_libs/quarto-html/axe/axe-check.js" type="module"></script>
<script src="../site_libs/quarto-html/popper.min.js"></script>
<script src="../site_libs/quarto-html/tippy.umd.min.js"></script>
<script src="../site_libs/quarto-html/anchor.min.js"></script>
<link href="../site_libs/quarto-html/tippy.css" rel="stylesheet">
<link href="../site_libs/quarto-html/quarto-syntax-highlighting-dark-2c84ecb840a13f4c7993f9e5648f0c14.css" rel="stylesheet" class="quarto-color-scheme quarto-color-alternate" id="quarto-text-highlighting-styles">
<link href="../site_libs/quarto-html/quarto-syntax-highlighting-6cf5824034cebd0380a5b9c74c43f006.css" rel="stylesheet" class="quarto-color-scheme" id="quarto-text-highlighting-styles">
<link href="../site_libs/quarto-html/quarto-syntax-highlighting-ff1c8a91a872873ab9706226229f9e30.css" rel="stylesheet" class="quarto-color-scheme" id="quarto-text-highlighting-styles">
<link href="../site_libs/quarto-html/quarto-syntax-highlighting-dark-04b38c9dba5d7c0f1fe2b621b39e7e62.css" rel="stylesheet" class="quarto-color-scheme quarto-color-alternate" id="quarto-text-highlighting-styles">
<link href="../site_libs/quarto-html/quarto-syntax-highlighting-ff1c8a91a872873ab9706226229f9e30.css" rel="stylesheet" class="quarto-color-scheme-extra" id="quarto-text-highlighting-styles">
<script src="../site_libs/bootstrap/bootstrap.min.js"></script>
<link href="../site_libs/bootstrap/bootstrap-icons.css" rel="stylesheet">
<link href="../site_libs/bootstrap/bootstrap-ec71cb1e120c0dd41819aca960e74e38.min.css" rel="stylesheet" append-hash="true" class="quarto-color-scheme" id="quarto-bootstrap" data-mode="light">
<link href="../site_libs/bootstrap/bootstrap-dark-716ed94a23403968eaa6fe981e0cbf91.min.css" rel="stylesheet" append-hash="true" class="quarto-color-scheme quarto-color-alternate" id="quarto-bootstrap" data-mode="dark">
<link href="../site_libs/bootstrap/bootstrap-ec71cb1e120c0dd41819aca960e74e38.min.css" rel="stylesheet" append-hash="true" class="quarto-color-scheme-extra" id="quarto-bootstrap" data-mode="light">
<link href="../site_libs/bootstrap/bootstrap-9b56b6674ace31b1957ea5f5ef42286f.min.css" rel="stylesheet" append-hash="true" class="quarto-color-scheme" id="quarto-bootstrap" data-mode="light">
<link href="../site_libs/bootstrap/bootstrap-dark-3c8015a3c2181875b3e8a350495bd83c.min.css" rel="stylesheet" append-hash="true" class="quarto-color-scheme quarto-color-alternate" id="quarto-bootstrap" data-mode="dark">
<link href="../site_libs/bootstrap/bootstrap-9b56b6674ace31b1957ea5f5ef42286f.min.css" rel="stylesheet" append-hash="true" class="quarto-color-scheme-extra" id="quarto-bootstrap" data-mode="light">
<script id="quarto-search-options" type="application/json">{
"location": "navbar",
"copy-button": false,
@ -113,18 +115,18 @@ div.csl-indent {
<meta name="citation_online_date" content="2025-04-24">
<meta name="citation_fulltext_html_url" content="https://drezil.de/Writing/Obsidian-RAG.html">
<meta name="citation_language" content="de">
<meta name="citation_reference" content="citation_title=Ollama - Chroma Cookbook;,citation_publication_date=2024-04;,citation_cover_date=2024-04;,citation_year=2024;,citation_fulltext_html_url=https://cookbook.chromadb.dev/integrations/ollama/embeddings/;">
<meta name="citation_reference" content="citation_title=Just wanted to mention that the smart connections plugin is incredible. : r/ObsidianMD;,citation_publication_date=2024-10;,citation_cover_date=2024-10;,citation_year=2024;,citation_fulltext_html_url=https://www.reddit.com/r/ObsidianMD/comments/1fzmkdk/just_wanted_to_mention_that_the_smart_connections/;">
<meta name="citation_reference" content="citation_title=Khoj: An AI powered Search Assistant for your Second Brain - Share &amp;amp;amp; showcase - Obsidian Forum;,citation_publication_date=2023-07;,citation_cover_date=2023-07;,citation_year=2023;,citation_fulltext_html_url=https://forum.obsidian.md/t/khoj-an-ai-powered-search-assistant-for-you-second-brain/53756;">
<meta name="citation_reference" content="citation_title=Supercharging Obsidian Search with AI and Ollama;,citation_author=undefined @airabbitX;,citation_publication_date=2024-11;,citation_cover_date=2024-11;,citation_year=2024;,citation_fulltext_html_url=https://medium.com/@airabbitX/supercharging-obsidian-search-with-local-llms-a-personal-journey-1e008eb649a6;">
<meta name="citation_reference" content="citation_title=Export to common graph formats - Plugins ideas - Obsidian Forum;,citation_publication_date=2020-02;,citation_cover_date=2020-02;,citation_year=2020;,citation_fulltext_html_url=https://forum.obsidian.md/t/export-to-common-graph-formats/4138;">
<meta name="citation_reference" content="citation_title=Personal Knowledge Graphs in Obsidian;,citation_author=Volodymyr Pavlyshyn;,citation_publication_date=2024-03;,citation_cover_date=2024-03;,citation_year=2024;,citation_fulltext_html_url=https://volodymyrpavlyshyn.medium.com/personal-knowledge-graphs-in-obsidian-528a0f4584b9;">
<meta name="citation_reference" content="citation_title=How to export your Obsidian Vault to RDF;,citation_author=Volodymyr Pavlyshyn;,citation_publication_date=2024-03;,citation_cover_date=2024-03;,citation_year=2024;,citation_fulltext_html_url=https://volodymyrpavlyshyn.medium.com/how-to-export-your-obsidian-vault-to-rdf-00fb2539ed18;">
<meta name="citation_reference" content="citation_title=AI empowered Zettelkasten with NER and Graph LLM - Knowledge management - Obsidian Forum;,citation_publication_date=2024-03;,citation_cover_date=2024-03;,citation_year=2024;,citation_fulltext_html_url=https://forum.obsidian.md/t/ai-empowered-zettelkasten-with-ner-and-graph-llm/79112;">
<meta name="citation_reference" content="citation_title=Build your second brain with Khoj AI;,citation_publication_date=2024-06;,citation_cover_date=2024-06;,citation_year=2024;,citation_fulltext_html_url=https://dswharshit.medium.com/build-your-second-brain-with-khoj-ai-high-signal-ai-2-87492730d7ce;">
<meta name="citation_reference" content="citation_title=Second Brain Assistant with Obsidian;,citation_publication_date=2025-03;,citation_cover_date=2025-03;,citation_year=2025;,citation_fulltext_html_url=https://www.ssp.sh/brain/second-brain-assistant-with-obsidian-notegpt/;">
<meta name="citation_reference" content="citation_title=Basic Memory | AI Conversations That Build Knowledge;,citation_fulltext_html_url=https://basicmachines.co/;">
<meta name="citation_reference" content="citation_title=Local (Free) RAG with Question Generation using LM Studio, Nomic embeddings, ChromaDB and Llama 3.2 on a Mac mini M1;,citation_author=Oscar Galvis;,citation_publication_date=2024-10;,citation_cover_date=2024-10;,citation_year=2024;,citation_fulltext_html_url=https://lomaky.medium.com/local-free-rag-with-question-generation-using-lm-studio-nomic-embeddings-chromadb-and-llama-3-2-9758877e93b4;">
<meta name="citation_reference" content="citation_title=Ollama - chroma cookbook;,citation_publication_date=2024-04;,citation_cover_date=2024-04;,citation_year=2024;,citation_fulltext_html_url=https://cookbook.chromadb.dev/integrations/ollama/embeddings/;">
<meta name="citation_reference" content="citation_title=Just wanted to mention that the smart connections plugin is incredible. : R/ObsidianMD;,citation_publication_date=2024-10;,citation_cover_date=2024-10;,citation_year=2024;,citation_fulltext_html_url=https://www.reddit.com/r/ObsidianMD/comments/1fzmkdk/just_wanted_to_mention_that_the_smart_connections/;">
<meta name="citation_reference" content="citation_title=Khoj: An AI powered search assistant for your second brain - share &amp;amp;amp; showcase - obsidian forum;,citation_publication_date=2023-07;,citation_cover_date=2023-07;,citation_year=2023;,citation_fulltext_html_url=https://forum.obsidian.md/t/khoj-an-ai-powered-search-assistant-for-you-second-brain/53756;">
<meta name="citation_reference" content="citation_title=Supercharging obsidian search with AI and ollama;,citation_author=undefined @airabbitX;,citation_publication_date=2024-11;,citation_cover_date=2024-11;,citation_year=2024;,citation_fulltext_html_url=https://medium.com/@airabbitX/supercharging-obsidian-search-with-local-llms-a-personal-journey-1e008eb649a6;">
<meta name="citation_reference" content="citation_title=Export to common graph formats - plugins ideas - obsidian forum;,citation_publication_date=2020-02;,citation_cover_date=2020-02;,citation_year=2020;,citation_fulltext_html_url=https://forum.obsidian.md/t/export-to-common-graph-formats/4138;">
<meta name="citation_reference" content="citation_title=Personal knowledge graphs in obsidian;,citation_author=Volodymyr Pavlyshyn;,citation_publication_date=2024-03;,citation_cover_date=2024-03;,citation_year=2024;,citation_fulltext_html_url=https://volodymyrpavlyshyn.medium.com/personal-knowledge-graphs-in-obsidian-528a0f4584b9;">
<meta name="citation_reference" content="citation_title=How to export your obsidian vault to RDF;,citation_author=Volodymyr Pavlyshyn;,citation_publication_date=2024-03;,citation_cover_date=2024-03;,citation_year=2024;,citation_fulltext_html_url=https://volodymyrpavlyshyn.medium.com/how-to-export-your-obsidian-vault-to-rdf-00fb2539ed18;">
<meta name="citation_reference" content="citation_title=AI empowered zettelkasten with NER and graph LLM - knowledge management - obsidian forum;,citation_publication_date=2024-03;,citation_cover_date=2024-03;,citation_year=2024;,citation_fulltext_html_url=https://forum.obsidian.md/t/ai-empowered-zettelkasten-with-ner-and-graph-llm/79112;">
<meta name="citation_reference" content="citation_title=Build your second brain with khoj AI;,citation_publication_date=2024-06;,citation_cover_date=2024-06;,citation_year=2024;,citation_fulltext_html_url=https://dswharshit.medium.com/build-your-second-brain-with-khoj-ai-high-signal-ai-2-87492730d7ce;">
<meta name="citation_reference" content="citation_title=Second brain assistant with obsidian;,citation_publication_date=2025-03;,citation_cover_date=2025-03;,citation_year=2025;,citation_fulltext_html_url=https://www.ssp.sh/brain/second-brain-assistant-with-obsidian-notegpt/;">
<meta name="citation_reference" content="citation_title=Basic memory | AI conversations that build knowledge;,citation_fulltext_html_url=https://basicmachines.co/;">
<meta name="citation_reference" content="citation_title=Local (free) RAG with question generation using LM studio, nomic embeddings, ChromaDB and llama 3.2 on a mac mini M1;,citation_author=Oscar Galvis;,citation_publication_date=2024-10;,citation_cover_date=2024-10;,citation_year=2024;,citation_fulltext_html_url=https://lomaky.medium.com/local-free-rag-with-question-generation-using-lm-studio-nomic-embeddings-chromadb-and-llama-3-2-9758877e93b4;">
<meta name="citation_reference" content="citation_title=privateGPT / llama.cpp based scripts;,citation_publication_date=2025-03;,citation_cover_date=2025-03;,citation_year=2025;,citation_fulltext_html_url=https://www.ssp.sh/brain/second-brain-assistant-with-obsidian-notegpt/;">
</head>
@ -146,7 +148,7 @@ div.csl-indent {
toggleBodyColorMode(bsSheetEl);
}
}
window.setColorSchemeToggle = (alternate) => {
const setColorSchemeToggle = (alternate) => {
const toggles = window.document.querySelectorAll('.quarto-color-scheme-toggle');
for (let i=0; i < toggles.length; i++) {
const toggle = toggles[i];
@ -179,7 +181,7 @@ div.csl-indent {
}
manageTransitions('#quarto-margin-sidebar .nav-link', true);
// Switch the toggles
window.setColorSchemeToggle(alternate)
setColorSchemeToggle(alternate)
// Hack to workaround the fact that safari doesn't
// properly recolor the scrollbar when toggling (#1455)
if (navigator.userAgent.indexOf('Safari') > 0 && navigator.userAgent.indexOf('Chrome') == -1) {
@ -219,7 +221,7 @@ div.csl-indent {
const isFileUrl = () => {
return window.location.protocol === 'file:';
}
window.hasAlternateSentinel = () => {
const hasAlternateSentinel = () => {
let styleSentinel = getColorSchemeSentinel();
if (styleSentinel !== null) {
return styleSentinel === "alternate";
@ -247,7 +249,7 @@ div.csl-indent {
const baseTheme = document.querySelector('#giscus-base-theme')?.value ?? 'light';
const alternateTheme = document.querySelector('#giscus-alt-theme')?.value ?? 'dark';
let newTheme = '';
if(darkModeDefault) {
if(authorPrefersDark) {
newTheme = isAlternate ? baseTheme : alternateTheme;
} else {
newTheme = isAlternate ? alternateTheme : baseTheme;
@ -270,17 +272,20 @@ div.csl-indent {
changeGiscusTheme();
}
};
const authorPrefersDark = false;
const queryPrefersDark = window.matchMedia('(prefers-color-scheme: dark)');
const darkModeDefault = queryPrefersDark.matches;
document.querySelector('link.quarto-color-scheme-extra').rel = 'disabled-stylesheet';
document.querySelector('link#quarto-text-highlighting-styles.quarto-color-scheme-extra').rel = 'disabled-stylesheet';
document.querySelector('link#quarto-bootstrap.quarto-color-scheme-extra').rel = 'disabled-stylesheet';
let localAlternateSentinel = darkModeDefault ? 'alternate' : 'default';
// Dark / light mode switch
window.quartoToggleColorScheme = () => {
// Read the current dark / light value
let toAlternate = !window.hasAlternateSentinel();
let toAlternate = !hasAlternateSentinel();
toggleColorMode(toAlternate);
setStyleSentinel(toAlternate);
toggleGiscusIfUsed(toAlternate, darkModeDefault);
window.dispatchEvent(new Event('resize'));
};
queryPrefersDark.addEventListener("change", e => {
if(window.localStorage.getItem("quarto-color-scheme") !== null)
@ -291,7 +296,7 @@ div.csl-indent {
toggleGiscusIfUsed(alternate, darkModeDefault);
});
// Switch to dark mode if need be
if (window.hasAlternateSentinel()) {
if (hasAlternateSentinel()) {
toggleColorMode(true);
} else {
toggleColorMode(false);
@ -303,6 +308,8 @@ div.csl-indent {
<nav class="navbar navbar-expand-lg " data-bs-theme="dark">
<div class="navbar-container container-fluid">
<div class="navbar-brand-container mx-auto">
<a href="../index.html" class="navbar-brand navbar-brand-logo">
</a>
<a class="navbar-brand" href="../index.html">
<span class="navbar-title">Nicole Dresselhaus</span>
</a>
@ -314,12 +321,12 @@ div.csl-indent {
<div class="collapse navbar-collapse" id="navbarCollapse">
<ul class="navbar-nav navbar-nav-scroll me-auto">
<li class="nav-item">
<a class="nav-link" href="../index.html"> <i class="bi bi-house" role="img">
<a class="nav-link active" href="../index.html" aria-current="page"> <i class="bi bi-house" role="img">
</i>
<span class="menu-text">Home</span></a>
</li>
<li class="nav-item">
<a class="nav-link active" href="../About/index.html" aria-current="page"> <i class="bi bi-file-person" role="img">
<a class="nav-link" href="../About/index.html"> <i class="bi bi-file-person" role="img">
</i>
<span class="menu-text">About</span></a>
</li>
@ -357,6 +364,10 @@ div.csl-indent {
<div id="quarto-content" class="quarto-container page-columns page-rows-contents page-layout-article page-navbar">
<!-- sidebar -->
<nav id="quarto-sidebar" class="sidebar collapse collapse-horizontal quarto-sidebar-collapse-item sidebar-navigation docked overflow-auto">
<div class="pt-lg-2 mt-2 text-left sidebar-header">
<a href="../index.html" class="sidebar-logo-link">
</a>
</div>
<div class="sidebar-menu-container">
<ul class="list-unstyled mt-1">
<li class="sidebar-item sidebar-item-section">
@ -400,12 +411,6 @@ div.csl-indent {
<a href="../Writing/Obsidian-RAG.html" class="sidebar-item-text sidebar-link active">
<span class="menu-text">RAG für eine Obsidian-Wissensdatenbank: Technische Ansätze</span></a>
</div>
</li>
<li class="sidebar-item">
<div class="sidebar-item-container">
<a href="../Obsidian-Articles/Artikelbewertung durch LLM.html" class="sidebar-item-text sidebar-link">
<span class="menu-text">Artikelbewertung durch ein Large Language Model (LLM) - Ein Beispiel aus der Praxis</span></a>
</div>
</li>
</ul>
</li>
@ -1203,7 +1208,7 @@ Für bestimmte Felder wie ORCID wird ein rein lokales LLM kaum die Werte erraten
a.appendChild(i);
window.document.body.appendChild(a);
}
window.setColorSchemeToggle(window.hasAlternateSentinel())
setColorSchemeToggle(hasAlternateSentinel())
const icon = "";
const anchorJS = new window.AnchorJS();
anchorJS.options = {

4
dist/Writing/RAG für eine Obsidian-Wissensdatenbank: Technische Ansätze/index.html vendored
View File

@ -6,6 +6,10 @@
var hash = window.location.hash.startsWith('#') ? window.location.hash.slice(1) : window.location.hash;
var redirect = redirects[hash] || redirects[""] || "/";
window.document.title = 'Redirect to ' + redirect;
if (!redirects[hash]) {
redirect = redirect + window.location.hash;
}
redirect = redirect + window.location.search;
window.location.replace(redirect);
</script>
</head>

365
dist/Writing/coding-age-ai.html vendored
View File

File diff suppressed because one or more lines are too long

91
dist/Writing/documentation.html vendored
View File

@ -2,7 +2,7 @@
<html xmlns="http://www.w3.org/1999/xhtml" lang="de" xml:lang="de"><head>
<meta charset="utf-8">
<meta name="generator" content="quarto-1.7.23">
<meta name="generator" content="quarto-1.8.17">
<meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">
@ -53,17 +53,19 @@ div.csl-indent {
<meta name="quarto:offset" content="../">
<script src="../site_libs/quarto-html/quarto.js" type="module"></script>
<script src="../site_libs/quarto-html/tabsets/tabsets.js" type="module"></script>
<script src="../site_libs/quarto-html/axe/axe-check.js" type="module"></script>
<script src="../site_libs/quarto-html/popper.min.js"></script>
<script src="../site_libs/quarto-html/tippy.umd.min.js"></script>
<script src="../site_libs/quarto-html/anchor.min.js"></script>
<link href="../site_libs/quarto-html/tippy.css" rel="stylesheet">
<link href="../site_libs/quarto-html/quarto-syntax-highlighting-dark-2c84ecb840a13f4c7993f9e5648f0c14.css" rel="stylesheet" class="quarto-color-scheme quarto-color-alternate" id="quarto-text-highlighting-styles">
<link href="../site_libs/quarto-html/quarto-syntax-highlighting-6cf5824034cebd0380a5b9c74c43f006.css" rel="stylesheet" class="quarto-color-scheme" id="quarto-text-highlighting-styles">
<link href="../site_libs/quarto-html/quarto-syntax-highlighting-ff1c8a91a872873ab9706226229f9e30.css" rel="stylesheet" class="quarto-color-scheme" id="quarto-text-highlighting-styles">
<link href="../site_libs/quarto-html/quarto-syntax-highlighting-dark-04b38c9dba5d7c0f1fe2b621b39e7e62.css" rel="stylesheet" class="quarto-color-scheme quarto-color-alternate" id="quarto-text-highlighting-styles">
<link href="../site_libs/quarto-html/quarto-syntax-highlighting-ff1c8a91a872873ab9706226229f9e30.css" rel="stylesheet" class="quarto-color-scheme-extra" id="quarto-text-highlighting-styles">
<script src="../site_libs/bootstrap/bootstrap.min.js"></script>
<link href="../site_libs/bootstrap/bootstrap-icons.css" rel="stylesheet">
<link href="../site_libs/bootstrap/bootstrap-ec71cb1e120c0dd41819aca960e74e38.min.css" rel="stylesheet" append-hash="true" class="quarto-color-scheme" id="quarto-bootstrap" data-mode="light">
<link href="../site_libs/bootstrap/bootstrap-dark-716ed94a23403968eaa6fe981e0cbf91.min.css" rel="stylesheet" append-hash="true" class="quarto-color-scheme quarto-color-alternate" id="quarto-bootstrap" data-mode="dark">
<link href="../site_libs/bootstrap/bootstrap-ec71cb1e120c0dd41819aca960e74e38.min.css" rel="stylesheet" append-hash="true" class="quarto-color-scheme-extra" id="quarto-bootstrap" data-mode="light">
<link href="../site_libs/bootstrap/bootstrap-9b56b6674ace31b1957ea5f5ef42286f.min.css" rel="stylesheet" append-hash="true" class="quarto-color-scheme" id="quarto-bootstrap" data-mode="light">
<link href="../site_libs/bootstrap/bootstrap-dark-3c8015a3c2181875b3e8a350495bd83c.min.css" rel="stylesheet" append-hash="true" class="quarto-color-scheme quarto-color-alternate" id="quarto-bootstrap" data-mode="dark">
<link href="../site_libs/bootstrap/bootstrap-9b56b6674ace31b1957ea5f5ef42286f.min.css" rel="stylesheet" append-hash="true" class="quarto-color-scheme-extra" id="quarto-bootstrap" data-mode="light">
<script id="quarto-search-options" type="application/json">{
"location": "navbar",
"copy-button": false,
@ -115,19 +117,19 @@ Nutzer*innen zu helfen, die theoretischen Grundlagen nachvollziehbar zu machen.
<meta name="citation_language" content="de">
<meta name="citation_reference" content="citation_title=Collaborative Historical Research in the Age of Big Data: Lessons from an Interdisciplinary Project;,citation_abstract=This book is output of the Living with Machines project;,citation_author=Ruth Ahnert;,citation_author=Emma Griffin;,citation_author=Mia Ridge;,citation_author=Giorgia Tolfo;,citation_publication_date=2023;,citation_cover_date=2023;,citation_year=2023;,citation_fulltext_html_url=https://www.cambridge.org/core/elements/collaborative-historical-research-in-the-age-of-big-data/839C422CCAA6C1699DE8D353B3A1960D;,citation_doi=10.1017/9781009175548;,citation_language=en-US;,citation_series_title=Cambridge Elements: Historical Theory and Practice;">
<meta name="citation_reference" content="citation_title=DFG-Praxisregeln &amp;amp;amp;quot;Digitalisierung&amp;quot;. Aktualisierte Fassung 2022.;,citation_abstract=Die DFG-Praxisregeln „Digitalisierung“ stellen eine zentrale Grundlage für DFG-geförderte Projekte im Programm „Digitalisierung und Erschließung“ dar: Sie formulieren Standards und enthalten Informationen zu organisatorischen, methodischen und technischen Fragen im Kontext der Digitalisierung und Erschließung forschungsrelevanter Objekte. Sie leisten damit einen wichtigen Beitrag zur Nachhaltigkeit, Zugänglichkeit und Anschlussfähigkeit geförderter Projekte und der in diesem Zusammenhang entstehenden Infrastruktur. Das vorliegende Dokument stellt eine aktualisierte Fassung der zuletzt 2016 durch die DFG publizierten Praxisregeln dar. Es wurde in Absprache mit der DFG-Geschäftsstelle durch eine vom NFDI-Konsortium NFDI4Culture initiierte Autor*innengruppe erarbeitet, deren Mitglieder mehrheitlich seit langem an der Ausgestaltung der Praxisregeln beteiligt waren sowie aktiv in die NFDI-Konsortien NFDI4Culture, NFDI4Memory, NFDI4Objects und Text+ eingebunden sind. Die jetzt überarbeitet vorliegenden Praxisregeln „Digitalisierung“ dienen als Ausgangspunkt für eine material- und communitybezogene Ausdifferenzierung der Praxisregeln durch die Communitys. Alle mit der Digitalisierung forschungsrelevanter Objekte befassten Communitys und Einrichtungen sind dazu aufgerufen, mit ihrer Expertise am weiteren Prozess mitzuwirken.;,citation_author=Reinhard Altenhöner;,citation_author=Andreas Berger;,citation_author=Christian Bracht;,citation_author=Paul Klimpel;,citation_author=Sebastian Meyer;,citation_author=Andreas Neuburger;,citation_author=Thomas Stäcker;,citation_author=Regine Stein;,citation_publication_date=2023-02-16;,citation_cover_date=2023-02-16;,citation_year=2023;,citation_fulltext_html_url=https://zenodo.org/record/7435724;,citation_language=deu;">
<meta name="citation_reference" content="citation_title=Introducing the FAIR Principles for Research Software;,citation_abstract=Research software is a fundamental and vital part of research, yet significant challenges to discoverability, productivity, quality, reproducibility, and sustainability exist. Improving the practice of scholarship is a common goal of the open science, open source, and FAIR (Findable, Accessible, Interoperable and Reusable) communities and research software is now being understood as a type of digital object to which FAIR should be applied. This emergence reflects a maturation of the research community to better understand the crucial role of FAIR research software in maximising research value. The FAIR for Research Software (FAIR4RS) Working Group has adapted the FAIR Guiding Principles to create the FAIR Principles for Research Software (FAIR4RS Principles). The contents and context of the FAIR4RS Principles are summarised here to provide the basis for discussion of their adoption. Examples of implementation by organisations are provided to share information on how to maximise the value of research outputs, and to encourage others to amplify the importance and impact of this work.;,citation_author=Michelle Barker;,citation_author=Neil P. Chue Hong;,citation_author=Daniel S. Katz;,citation_author=Anna-Lena Lamprecht;,citation_author=Carlos Martinez-Ortiz;,citation_author=Fotis Psomopoulos;,citation_author=Jennifer Harrow;,citation_author=Leyla Jael Castro;,citation_author=Morane Gruenpeter;,citation_author=Paula Andrea Martinez;,citation_author=Tom Honeyman;,citation_publication_date=2022-10-14;,citation_cover_date=2022-10-14;,citation_year=2022;,citation_fulltext_html_url=https://www.nature.com/articles/s41597-022-01710-x;,citation_issue=1;,citation_doi=10.1038/s41597-022-01710-x;,citation_issn=2052-4463;,citation_volume=9;,citation_language=en-US;,citation_journal_title=Scientific Data;,citation_journal_abbrev=Sci Data;,citation_publisher=Nature Publishing Group;">
<meta name="citation_reference" content="citation_title=Introducing the FAIR Principles for research software;,citation_abstract=Research software is a fundamental and vital part of research, yet significant challenges to discoverability, productivity, quality, reproducibility, and sustainability exist. Improving the practice of scholarship is a common goal of the open science, open source, and FAIR (Findable, Accessible, Interoperable and Reusable) communities and research software is now being understood as a type of digital object to which FAIR should be applied. This emergence reflects a maturation of the research community to better understand the crucial role of FAIR research software in maximising research value. The FAIR for Research Software (FAIR4RS) Working Group has adapted the FAIR Guiding Principles to create the FAIR Principles for Research Software (FAIR4RS Principles). The contents and context of the FAIR4RS Principles are summarised here to provide the basis for discussion of their adoption. Examples of implementation by organisations are provided to share information on how to maximise the value of research outputs, and to encourage others to amplify the importance and impact of this work.;,citation_author=Michelle Barker;,citation_author=Neil P. Chue Hong;,citation_author=Daniel S. Katz;,citation_author=Anna-Lena Lamprecht;,citation_author=Carlos Martinez-Ortiz;,citation_author=Fotis Psomopoulos;,citation_author=Jennifer Harrow;,citation_author=Leyla Jael Castro;,citation_author=Morane Gruenpeter;,citation_author=Paula Andrea Martinez;,citation_author=Tom Honeyman;,citation_publication_date=2022-10-14;,citation_cover_date=2022-10-14;,citation_year=2022;,citation_fulltext_html_url=https://www.nature.com/articles/s41597-022-01710-x;,citation_issue=1;,citation_doi=10.1038/s41597-022-01710-x;,citation_issn=2052-4463;,citation_volume=9;,citation_language=en-US;,citation_journal_title=Scientific Data;,citation_journal_abbrev=Sci Data;,citation_publisher=Nature Publishing Group;">
<meta name="citation_reference" content="citation_title=Projektmanagement und Digital Humanities: Zur klugen Gestaltung der Zusammenarbeit;,citation_abstract=Die Professionalisierung des Projektmanagements in den Digital Humanities: Theorie und Praxis zum Weiterdenken.;,citation_editor=Fabian Cremer;,citation_editor=Swantje Dogunke;,citation_editor=Anna Maria Neubert;,citation_editor=Thorsten Wübbena;,citation_publication_date=2024-04;,citation_cover_date=2024-04;,citation_year=2024;,citation_doi=10.14361/9783839469675;,citation_language=de-DE;">
<meta name="citation_reference" content="citation_title=The Journal of Open Source Software (JOSS): Bringing Open-Source Software Practices to the Scholarly Publishing Community for Authors, Reviewers, Editors, and Publishers;,citation_abstract=Introduction: Open-source software (OSS) is a critical component of open science, but contributions to the OSS ecosystem are systematically undervalued in the current academic system. The Journal of Open Source Software (JOSS) contributes to addressing this by providing a venue (that is itself free, diamond open access, and all open-source, built in a layered structure using widely available elements/services of the scholarly publishing ecosystem) for publishing OSS, run in the style of OSS itself. A particularly distinctive element of JOSS is that it uses open peer review in a collaborative, iterative format, unlike most publishers. Additionally, all the components of the process—from the reviews to the papers to the software that is the subject of the papers to the software that the journal runs—are open. Background: We describe JOSS’s history and its peer review process using an editorial bot, and we present statistics gathered from JOSS’s public review history on GitHub showing an increasing number of peer reviewed papers each year. We discuss the new JOSSCast and use it as a data source to understand reasons why interviewed authors decided to publish in JOSS. Discussion and Outlook: JOSS’s process differs significantly from traditional journals, which has impeded JOSS’s inclusion in indexing services such as Web of Science. In turn, this discourages researchers within certain academic systems, such as Italy’s, which emphasize the importance of Web of Science and/or Scopus indexing for grant applications and promotions. JOSS is a fully diamond open-access journal with a cost of around US$5 per paper for the 401 papers published in 2023. The scalability of running JOSS with volunteers and financing JOSS with grants and donations is discussed.;,citation_author=Patrick Diehl;,citation_author=Charlotte Soneson;,citation_author=Rachel C. Kurchin;,citation_author=Ross Mounce;,citation_author=Daniel S. Katz;,citation_publication_date=2025-02-04;,citation_cover_date=2025-02-04;,citation_year=2025;,citation_fulltext_html_url=https://www.iastatedigitalpress.com/jlsc/article/id/18285/;,citation_issue=2, 2;,citation_doi=10.31274/jlsc.18285;,citation_issn=2162-3309;,citation_volume=12;,citation_language=en-US;,citation_journal_title=Journal of Librarianship and Scholarly Communication;,citation_publisher=Iowa State University Digital Press;">
<meta name="citation_reference" content="citation_title=Endings Principles for Digital Longevity;,citation_abstract=Enabling Sustainable Digital Humanities Projects;,citation_author=Endings Project Team;,citation_publication_date=2023-03-03;,citation_cover_date=2023-03-03;,citation_year=2023;,citation_fulltext_html_url=https://endings.uvic.ca/principles.html;,citation_language=en-US;">
<meta name="citation_reference" content="citation_title=Leitlinien zur Sicherung guter wissenschaftlicher Praxis;,citation_abstract=The DFG´s Code of Conduct “Safeguarding Good Research Practice” represents the consensus among the member organisations of the DFG on the fundamental principles and standards of good practice and are upheld by these organisations. These guidelines underline the importance of integrity in the everyday practice of research and provide researchers with a reliable reference with which to embed good research practice as an established and binding aspect of their work.;,citation_publication_date=2024-09;,citation_cover_date=2024-09;,citation_year=2024;,citation_fulltext_html_url=https://zenodo.org/records/14281892;,citation_doi=10.5281/zenodo.14281892;,citation_language=de-DE;,citation_publisher=Deutsche Forschungsgemeinschaft;">
<meta name="citation_reference" content="citation_title=Open Source Research Software;,citation_author=Wilhelm Hasselbring;,citation_author=Leslie Carr;,citation_author=Simon Hettrick;,citation_author=Heather Packer;,citation_author=Thanassis Tiropanis;,citation_publication_date=2020-08;,citation_cover_date=2020-08;,citation_year=2020;,citation_fulltext_html_url=https://ieeexplore.ieee.org/document/9153295/;,citation_issue=8;,citation_doi=10.1109/MC.2020.2998235;,citation_issn=0018-9162, 1558-0814;,citation_volume=53;,citation_journal_title=Computer;,citation_journal_abbrev=Computer;">
<meta name="citation_reference" content="citation_title=Four Simple Recommendations to Encourage Best Practices in Research Software;,citation_abstract=Scientific research relies on computer software, yet software is not always developed following practices that ensure its quality and sustainability. This manuscript does not aim to propose new software development best practices, but rather to provide simple recommendations that encourage the adoption of existing best practices. Software development best practices promote better quality software, and better quality software improves the reproducibility and reusability of research. These recommendations are designed around Open Source values, and provide practical suggestions that contribute to making research software and its source code more discoverable, reusable and transparent. This manuscript is aimed at developers, but also at organisations, projects, journals and funders that can increase the quality and sustainability of research software by encouraging the adoption of these recommendations.;,citation_author=Rafael C. Jiménez;,citation_author=Mateusz Kuzak;,citation_author=Monther Alhamdoosh;,citation_author=Michelle Barker;,citation_author=Bérénice Batut;,citation_author=Mikael Borg;,citation_author=Salvador Capella-Gutierrez;,citation_author=Neil Chue Hong;,citation_author=Martin Cook;,citation_author=Manuel Corpas;,citation_author=Madison Flannery;,citation_author=Leyla Garcia;,citation_author=Josep Ll. Gelpí;,citation_author=Simon Gladman;,citation_author=Carole Goble;,citation_author=Montserrat González Ferreiro;,citation_author=Alejandra Gonzalez-Beltran;,citation_author=Philippa C. Griffin;,citation_author=Björn Grüning;,citation_author=Jonas Hagberg;,citation_author=Petr Holub;,citation_author=Rob Hooft;,citation_author=Jon Ison;,citation_author=Daniel S. Katz;,citation_author=Brane Leskošek;,citation_author=Federico López Gómez;,citation_author=Luis J. Oliveira;,citation_author=David Mellor;,citation_author=Rowland Mosbergen;,citation_author=Nicola Mulder;,citation_author=Yasset Perez-Riverol;,citation_author=Robert Pergl;,citation_author=Horst Pichler;,citation_author=Bernard Pope;,citation_author=Ferran Sanz;,citation_author=Maria V. Schneider;,citation_author=Victoria Stodden;,citation_author=Radosław Suchecki;,citation_author=Radka Svobodová Vařeková;,citation_author=Harry-Anton Talvik;,citation_author=Ilian Todorov;,citation_author=Andrew Treloar;,citation_author=Sonika Tyagi;,citation_author=Maarten Van Gompel;,citation_author=Daniel Vaughan;,citation_author=Allegra Via;,citation_author=Xiaochuan Wang;,citation_author=Nathan S. Watson-Haigh;,citation_author=Steve Crouch;,citation_publication_date=2017-06-13;,citation_cover_date=2017-06-13;,citation_year=2017;,citation_fulltext_html_url=https://f1000research.com/articles/6-876/v1;,citation_doi=10.12688/f1000research.11407.1;,citation_issn=2046-1402;,citation_volume=6;,citation_language=en-US;,citation_journal_title=F1000Research;,citation_journal_abbrev=F1000Res;">
<meta name="citation_reference" content="citation_title=Jupyter Notebooks – a Publishing Format for Reproducible Computational Workflows;,citation_abstract=It is increasingly necessary for researchers in all fields to write computer code, and in order to reproduce research results, it is important that this code is published. We present Jupyter notebooks, a document format for publishing code, results and explanations in a form that is both readable and executable. We discuss various tools and use cases for notebook documents.;,citation_author=Thomas Kluyver;,citation_author=Benjamin Ragan-Kelley;,citation_author=Fernando Pérez;,citation_author=Brian Granger;,citation_author=Matthias Bussonnier;,citation_author=Jonathan Frederic;,citation_author=Kyle Kelley;,citation_author=Jessica Hamrick;,citation_author=Jason Grout;,citation_author=Sylvain Corlay;,citation_author=Paul Ivanov;,citation_author=Damián Avila;,citation_author=Safia Abdalla;,citation_author=Carol Willing;,citation_author=Jupyter team;,citation_editor=Fernando Loizides;,citation_editor=Birgit Scmidt;,citation_publication_date=2016;,citation_cover_date=2016;,citation_year=2016;,citation_fulltext_html_url=https://eprints.soton.ac.uk/403913/;,citation_doi=10.3233/978-1-61499-649-1-87;,citation_language=en-US;,citation_conference=IOS Press;">
<meta name="citation_reference" content="citation_title=Towards FAIR Principles for&nbsp;Research&nbsp;Software;,citation_abstract=The FAIR Guiding Principles, published in 2016, aim to improve the findability, accessibility, interoperability and reusability of digital research objects for both humans and machines. Until now the FAIR principles have been mostly applied to research data. The ideas behind these principles are, however, also directly relevant to research software. Hence there is a distinct need to explore how the FAIR principles can be applied to software. In this work, we aim to summarize the current status of the debate around FAIR and software, as basis for the development of community-agreed principles for FAIR research software in the future. We discuss what makes software different from data with regard to the application of the FAIR principles, and which desired characteristics of research software go beyond FAIR. Then we present an analysis of where the existing principles can directly be applied to software, where they need to be adapted or reinterpreted, and where the definition of additional principles is required. Here interoperability has proven to be the most challenging principle, calling for particular attention in future discussions. Finally, we outline next steps on the way towards definite FAIR principles for research software.;,citation_author=Anna-Lena Lamprecht;,citation_author=Leyla Garcia;,citation_author=Mateusz Kuzak;,citation_author=Carlos Martinez;,citation_author=Ricardo Arcila;,citation_author=Eva Martin Del Pico;,citation_author=Victoria Dominguez Del Angel;,citation_author=Stephanie Sandt;,citation_author=Jon Ison;,citation_author=Paula Andrea Martinez;,citation_author=Peter McQuilton;,citation_author=Alfonso Valencia;,citation_author=Jennifer Harrow;,citation_author=Fotis Psomopoulos;,citation_author=Josep Ll. Gelpi;,citation_author=Neil Chue Hong;,citation_author=Carole Goble;,citation_author=Salvador Capella-Gutierrez;,citation_publication_date=2020-06-12;,citation_cover_date=2020-06-12;,citation_year=2020;,citation_fulltext_html_url=https://doi.org/10.3233/DS-190026;,citation_issue=1;,citation_doi=10.3233/DS-190026;,citation_issn=2451-8484;,citation_volume=3;,citation_language=en-US;,citation_journal_title=Data Science;,citation_publisher=SAGE Publications;">
<meta name="citation_reference" content="citation_title=Ten Simple Rules for Documenting Scientific Software;,citation_author=Benjamin D. Lee;,citation_publication_date=2018-12-20;,citation_cover_date=2018-12-20;,citation_year=2018;,citation_fulltext_html_url=https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1006561;,citation_issue=12;,citation_doi=10.1371/journal.pcbi.1006561;,citation_issn=1553-7358;,citation_volume=14;,citation_language=en-US;,citation_journal_title=PLOS Computational Biology;,citation_journal_abbrev=PLOS Computational Biology;,citation_publisher=Public Library of Science;">
<meta name="citation_reference" content="citation_title=Four simple recommendations to encourage best practices in research software;,citation_abstract=Scientific research relies on computer software, yet software is not always developed following practices that ensure its quality and sustainability. This manuscript does not aim to propose new software development best practices, but rather to provide simple recommendations that encourage the adoption of existing best practices. Software development best practices promote better quality software, and better quality software improves the reproducibility and reusability of research. These recommendations are designed around Open Source values, and provide practical suggestions that contribute to making research software and its source code more discoverable, reusable and transparent. This manuscript is aimed at developers, but also at organisations, projects, journals and funders that can increase the quality and sustainability of research software by encouraging the adoption of these recommendations.;,citation_author=Rafael C. Jiménez;,citation_author=Mateusz Kuzak;,citation_author=Monther Alhamdoosh;,citation_author=Michelle Barker;,citation_author=Bérénice Batut;,citation_author=Mikael Borg;,citation_author=Salvador Capella-Gutierrez;,citation_author=Neil Chue Hong;,citation_author=Martin Cook;,citation_author=Manuel Corpas;,citation_author=Madison Flannery;,citation_author=Leyla Garcia;,citation_author=Josep Ll. Gelpí;,citation_author=Simon Gladman;,citation_author=Carole Goble;,citation_author=Montserrat González Ferreiro;,citation_author=Alejandra Gonzalez-Beltran;,citation_author=Philippa C. Griffin;,citation_author=Björn Grüning;,citation_author=Jonas Hagberg;,citation_author=Petr Holub;,citation_author=Rob Hooft;,citation_author=Jon Ison;,citation_author=Daniel S. Katz;,citation_author=Brane Leskošek;,citation_author=Federico López Gómez;,citation_author=Luis J. Oliveira;,citation_author=David Mellor;,citation_author=Rowland Mosbergen;,citation_author=Nicola Mulder;,citation_author=Yasset Perez-Riverol;,citation_author=Robert Pergl;,citation_author=Horst Pichler;,citation_author=Bernard Pope;,citation_author=Ferran Sanz;,citation_author=Maria V. Schneider;,citation_author=Victoria Stodden;,citation_author=Radosław Suchecki;,citation_author=Radka Svobodová Vařeková;,citation_author=Harry-Anton Talvik;,citation_author=Ilian Todorov;,citation_author=Andrew Treloar;,citation_author=Sonika Tyagi;,citation_author=Maarten Van Gompel;,citation_author=Daniel Vaughan;,citation_author=Allegra Via;,citation_author=Xiaochuan Wang;,citation_author=Nathan S. Watson-Haigh;,citation_author=Steve Crouch;,citation_publication_date=2017-06-13;,citation_cover_date=2017-06-13;,citation_year=2017;,citation_fulltext_html_url=https://f1000research.com/articles/6-876/v1;,citation_doi=10.12688/f1000research.11407.1;,citation_issn=2046-1402;,citation_volume=6;,citation_language=en-US;,citation_journal_title=F1000Research;,citation_journal_abbrev=F1000Res;">
<meta name="citation_reference" content="citation_title=Jupyter Notebooks – a publishing format for reproducible computational workflows;,citation_abstract=It is increasingly necessary for researchers in all fields to write computer code, and in order to reproduce research results, it is important that this code is published. We present Jupyter notebooks, a document format for publishing code, results and explanations in a form that is both readable and executable. We discuss various tools and use cases for notebook documents.;,citation_author=Thomas Kluyver;,citation_author=Benjamin Ragan-Kelley;,citation_author=Fernando Pérez;,citation_author=Brian Granger;,citation_author=Matthias Bussonnier;,citation_author=Jonathan Frederic;,citation_author=Kyle Kelley;,citation_author=Jessica Hamrick;,citation_author=Jason Grout;,citation_author=Sylvain Corlay;,citation_author=Paul Ivanov;,citation_author=Damián Avila;,citation_author=Safia Abdalla;,citation_author=Carol Willing;,citation_author=Jupyter team;,citation_editor=Fernando Loizides;,citation_editor=Birgit Scmidt;,citation_publication_date=2016;,citation_cover_date=2016;,citation_year=2016;,citation_fulltext_html_url=https://eprints.soton.ac.uk/403913/;,citation_doi=10.3233/978-1-61499-649-1-87;,citation_language=en-US;,citation_conference=IOS Press;">
<meta name="citation_reference" content="citation_title=Towards FAIR principles for&nbsp;research&nbsp;software;,citation_abstract=The FAIR Guiding Principles, published in 2016, aim to improve the findability, accessibility, interoperability and reusability of digital research objects for both humans and machines. Until now the FAIR principles have been mostly applied to research data. The ideas behind these principles are, however, also directly relevant to research software. Hence there is a distinct need to explore how the FAIR principles can be applied to software. In this work, we aim to summarize the current status of the debate around FAIR and software, as basis for the development of community-agreed principles for FAIR research software in the future. We discuss what makes software different from data with regard to the application of the FAIR principles, and which desired characteristics of research software go beyond FAIR. Then we present an analysis of where the existing principles can directly be applied to software, where they need to be adapted or reinterpreted, and where the definition of additional principles is required. Here interoperability has proven to be the most challenging principle, calling for particular attention in future discussions. Finally, we outline next steps on the way towards definite FAIR principles for research software.;,citation_author=Anna-Lena Lamprecht;,citation_author=Leyla Garcia;,citation_author=Mateusz Kuzak;,citation_author=Carlos Martinez;,citation_author=Ricardo Arcila;,citation_author=Eva Martin Del Pico;,citation_author=Victoria Dominguez Del Angel;,citation_author=Stephanie Sandt;,citation_author=Jon Ison;,citation_author=Paula Andrea Martinez;,citation_author=Peter McQuilton;,citation_author=Alfonso Valencia;,citation_author=Jennifer Harrow;,citation_author=Fotis Psomopoulos;,citation_author=Josep Ll. Gelpi;,citation_author=Neil Chue Hong;,citation_author=Carole Goble;,citation_author=Salvador Capella-Gutierrez;,citation_publication_date=2020-06-12;,citation_cover_date=2020-06-12;,citation_year=2020;,citation_fulltext_html_url=https://doi.org/10.3233/DS-190026;,citation_issue=1;,citation_doi=10.3233/DS-190026;,citation_issn=2451-8484;,citation_volume=3;,citation_language=en-US;,citation_journal_title=Data Science;,citation_publisher=SAGE Publications;">
<meta name="citation_reference" content="citation_title=Ten simple rules for documenting scientific software;,citation_author=Benjamin D. Lee;,citation_publication_date=2018-12-20;,citation_cover_date=2018-12-20;,citation_year=2018;,citation_fulltext_html_url=https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1006561;,citation_issue=12;,citation_doi=10.1371/journal.pcbi.1006561;,citation_issn=1553-7358;,citation_volume=14;,citation_language=en-US;,citation_journal_title=PLOS Computational Biology;,citation_journal_abbrev=PLOS Computational Biology;,citation_publisher=Public Library of Science;">
<meta name="citation_reference" content="citation_title=Ten Simple Rules for the Open Development of Scientific Software;,citation_author=Andreas Prlić;,citation_author=James B. Procter;,citation_publication_date=2012-12-06;,citation_cover_date=2012-12-06;,citation_year=2012;,citation_fulltext_html_url=https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1002802;,citation_issue=12;,citation_doi=10.1371/journal.pcbi.1002802;,citation_issn=1553-7358;,citation_volume=8;,citation_language=en-US;,citation_journal_title=PLOS Computational Biology;,citation_journal_abbrev=PLOS Computational Biology;,citation_publisher=Public Library of Science;">
<meta name="citation_reference" content="citation_title=Software Citation Principles;,citation_abstract=Software is a critical part of modern research and yet there is little support across the scholarly ecosystem for its acknowledgement and citation. Inspired by the activities of the FORCE11 working group focused on data citation, this document summarizes the recommendations of the FORCE11 Software Citation Working Group and its activities between June 2015 and April 2016. Based on a review of existing community practices, the goal of the working group was to produce a consolidated set of citation principles that may encourage broad adoption of a consistent policy for software citation across disciplines and venues. Our work is presented here as a set of software citation principles, a discussion of the motivations for developing the principles, reviews of existing community practice, and a discussion of the requirements these principles would place upon different stakeholders. Working examples and possible technical solutions for how these principles can be implemented will be discussed in a separate paper.;,citation_author=Arfon M. Smith;,citation_author=Daniel S. Katz;,citation_author=Kyle E. Niemeyer;,citation_publication_date=2016;,citation_cover_date=2016;,citation_year=2016;,citation_fulltext_html_url=https://peerj.com/articles/cs-86;,citation_doi=10.7717/peerj-cs.86;,citation_issn=2376-5992;,citation_volume=2;,citation_language=en-US;,citation_journal_title=PeerJ Computer Science;,citation_journal_abbrev=PeerJ Comput. Sci.;,citation_publisher=PeerJ Inc.;">
<meta name="citation_reference" content="citation_title=Good Enough Practices in Scientific Computing;,citation_abstract=Author summary Computers are now essential in all branches of science, but most researchers are never taught the equivalent of basic lab skills for research computing. As a result, data can get lost, analyses can take much longer than necessary, and researchers are limited in how effectively they can work with software and data. Computing workflows need to follow the same practices as lab projects and notebooks, with organized data, documented steps, and the project structured for reproducibility, but researchers new to computing often don’t know where to start. This paper presents a set of good computing practices that every researcher can adopt, regardless of their current level of computational skill. These practices, which encompass data management, programming, collaborating with colleagues, organizing projects, tracking work, and writing manuscripts, are drawn from a wide variety of published sources from our daily lives and from our work with volunteer organizations that have delivered workshops to over 11,000 people since 2010.;,citation_author=Greg Wilson;,citation_author=Jennifer Bryan;,citation_author=Karen Cranston;,citation_author=Justin Kitzes;,citation_author=Lex Nederbragt;,citation_author=Tracy K. Teal;,citation_publication_date=2017-06-22;,citation_cover_date=2017-06-22;,citation_year=2017;,citation_fulltext_html_url=https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1005510;,citation_issue=6;,citation_doi=10.1371/journal.pcbi.1005510;,citation_issn=1553-7358;,citation_volume=13;,citation_language=en-US;,citation_journal_title=PLOS Computational Biology;,citation_journal_abbrev=PLOS Computational Biology;,citation_publisher=Public Library of Science;">
<meta name="citation_reference" content="citation_title=Software citation principles;,citation_abstract=Software is a critical part of modern research and yet there is little support across the scholarly ecosystem for its acknowledgement and citation. Inspired by the activities of the FORCE11 working group focused on data citation, this document summarizes the recommendations of the FORCE11 Software Citation Working Group and its activities between June 2015 and April 2016. Based on a review of existing community practices, the goal of the working group was to produce a consolidated set of citation principles that may encourage broad adoption of a consistent policy for software citation across disciplines and venues. Our work is presented here as a set of software citation principles, a discussion of the motivations for developing the principles, reviews of existing community practice, and a discussion of the requirements these principles would place upon different stakeholders. Working examples and possible technical solutions for how these principles can be implemented will be discussed in a separate paper.;,citation_author=Arfon M. Smith;,citation_author=Daniel S. Katz;,citation_author=Kyle E. Niemeyer;,citation_publication_date=2016;,citation_cover_date=2016;,citation_year=2016;,citation_fulltext_html_url=https://peerj.com/articles/cs-86;,citation_doi=10.7717/peerj-cs.86;,citation_issn=2376-5992;,citation_volume=2;,citation_language=en-US;,citation_journal_title=PeerJ Computer Science;,citation_journal_abbrev=PeerJ Comput. Sci.;,citation_publisher=PeerJ Inc.;">
<meta name="citation_reference" content="citation_title=Good enough practices in scientific computing;,citation_abstract=Author summary Computers are now essential in all branches of science, but most researchers are never taught the equivalent of basic lab skills for research computing. As a result, data can get lost, analyses can take much longer than necessary, and researchers are limited in how effectively they can work with software and data. Computing workflows need to follow the same practices as lab projects and notebooks, with organized data, documented steps, and the project structured for reproducibility, but researchers new to computing often don’t know where to start. This paper presents a set of good computing practices that every researcher can adopt, regardless of their current level of computational skill. These practices, which encompass data management, programming, collaborating with colleagues, organizing projects, tracking work, and writing manuscripts, are drawn from a wide variety of published sources from our daily lives and from our work with volunteer organizations that have delivered workshops to over 11,000 people since 2010.;,citation_author=Greg Wilson;,citation_author=Jennifer Bryan;,citation_author=Karen Cranston;,citation_author=Justin Kitzes;,citation_author=Lex Nederbragt;,citation_author=Tracy K. Teal;,citation_publication_date=2017-06-22;,citation_cover_date=2017-06-22;,citation_year=2017;,citation_fulltext_html_url=https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1005510;,citation_issue=6;,citation_doi=10.1371/journal.pcbi.1005510;,citation_issn=1553-7358;,citation_volume=13;,citation_language=en-US;,citation_journal_title=PLOS Computational Biology;,citation_journal_abbrev=PLOS Computational Biology;,citation_publisher=Public Library of Science;">
</head>
<body class="nav-sidebar docked nav-fixed slimcontent quarto-light"><script id="quarto-html-before-body" type="application/javascript">
@ -148,7 +150,7 @@ Nutzer*innen zu helfen, die theoretischen Grundlagen nachvollziehbar zu machen.
toggleBodyColorMode(bsSheetEl);
}
}
window.setColorSchemeToggle = (alternate) => {
const setColorSchemeToggle = (alternate) => {
const toggles = window.document.querySelectorAll('.quarto-color-scheme-toggle');
for (let i=0; i < toggles.length; i++) {
const toggle = toggles[i];
@ -181,7 +183,7 @@ Nutzer*innen zu helfen, die theoretischen Grundlagen nachvollziehbar zu machen.
}
manageTransitions('#quarto-margin-sidebar .nav-link', true);
// Switch the toggles
window.setColorSchemeToggle(alternate)
setColorSchemeToggle(alternate)
// Hack to workaround the fact that safari doesn't
// properly recolor the scrollbar when toggling (#1455)
if (navigator.userAgent.indexOf('Safari') > 0 && navigator.userAgent.indexOf('Chrome') == -1) {
@ -221,7 +223,7 @@ Nutzer*innen zu helfen, die theoretischen Grundlagen nachvollziehbar zu machen.
const isFileUrl = () => {
return window.location.protocol === 'file:';
}
window.hasAlternateSentinel = () => {
const hasAlternateSentinel = () => {
let styleSentinel = getColorSchemeSentinel();
if (styleSentinel !== null) {
return styleSentinel === "alternate";
@ -249,7 +251,7 @@ Nutzer*innen zu helfen, die theoretischen Grundlagen nachvollziehbar zu machen.
const baseTheme = document.querySelector('#giscus-base-theme')?.value ?? 'light';
const alternateTheme = document.querySelector('#giscus-alt-theme')?.value ?? 'dark';
let newTheme = '';
if(darkModeDefault) {
if(authorPrefersDark) {
newTheme = isAlternate ? baseTheme : alternateTheme;
} else {
newTheme = isAlternate ? alternateTheme : baseTheme;
@ -272,17 +274,20 @@ Nutzer*innen zu helfen, die theoretischen Grundlagen nachvollziehbar zu machen.
changeGiscusTheme();
}
};
const authorPrefersDark = false;
const queryPrefersDark = window.matchMedia('(prefers-color-scheme: dark)');
const darkModeDefault = queryPrefersDark.matches;
document.querySelector('link.quarto-color-scheme-extra').rel = 'disabled-stylesheet';
document.querySelector('link#quarto-text-highlighting-styles.quarto-color-scheme-extra').rel = 'disabled-stylesheet';
document.querySelector('link#quarto-bootstrap.quarto-color-scheme-extra').rel = 'disabled-stylesheet';
let localAlternateSentinel = darkModeDefault ? 'alternate' : 'default';
// Dark / light mode switch
window.quartoToggleColorScheme = () => {
// Read the current dark / light value
let toAlternate = !window.hasAlternateSentinel();
let toAlternate = !hasAlternateSentinel();
toggleColorMode(toAlternate);
setStyleSentinel(toAlternate);
toggleGiscusIfUsed(toAlternate, darkModeDefault);
window.dispatchEvent(new Event('resize'));
};
queryPrefersDark.addEventListener("change", e => {
if(window.localStorage.getItem("quarto-color-scheme") !== null)
@ -293,7 +298,7 @@ Nutzer*innen zu helfen, die theoretischen Grundlagen nachvollziehbar zu machen.
toggleGiscusIfUsed(alternate, darkModeDefault);
});
// Switch to dark mode if need be
if (window.hasAlternateSentinel()) {
if (hasAlternateSentinel()) {
toggleColorMode(true);
} else {
toggleColorMode(false);
@ -305,6 +310,8 @@ Nutzer*innen zu helfen, die theoretischen Grundlagen nachvollziehbar zu machen.
<nav class="navbar navbar-expand-lg " data-bs-theme="dark">
<div class="navbar-container container-fluid">
<div class="navbar-brand-container mx-auto">
<a href="../index.html" class="navbar-brand navbar-brand-logo">
</a>
<a class="navbar-brand" href="../index.html">
<span class="navbar-title">Nicole Dresselhaus</span>
</a>
@ -316,12 +323,12 @@ Nutzer*innen zu helfen, die theoretischen Grundlagen nachvollziehbar zu machen.
<div class="collapse navbar-collapse" id="navbarCollapse">
<ul class="navbar-nav navbar-nav-scroll me-auto">
<li class="nav-item">
<a class="nav-link" href="../index.html"> <i class="bi bi-house" role="img">
<a class="nav-link active" href="../index.html" aria-current="page"> <i class="bi bi-house" role="img">
</i>
<span class="menu-text">Home</span></a>
</li>
<li class="nav-item">
<a class="nav-link active" href="../About/index.html" aria-current="page"> <i class="bi bi-file-person" role="img">
<a class="nav-link" href="../About/index.html"> <i class="bi bi-file-person" role="img">
</i>
<span class="menu-text">About</span></a>
</li>
@ -359,6 +366,10 @@ Nutzer*innen zu helfen, die theoretischen Grundlagen nachvollziehbar zu machen.
<div id="quarto-content" class="quarto-container page-columns page-rows-contents page-layout-article page-navbar">
<!-- sidebar -->
<nav id="quarto-sidebar" class="sidebar collapse collapse-horizontal quarto-sidebar-collapse-item sidebar-navigation docked overflow-auto">
<div class="pt-lg-2 mt-2 text-left sidebar-header">
<a href="../index.html" class="sidebar-logo-link">
</a>
</div>
<div class="sidebar-menu-container">
<ul class="list-unstyled mt-1">
<li class="sidebar-item sidebar-item-section">
@ -402,12 +413,6 @@ Nutzer*innen zu helfen, die theoretischen Grundlagen nachvollziehbar zu machen.
<a href="../Writing/Obsidian-RAG.html" class="sidebar-item-text sidebar-link">
<span class="menu-text">RAG für eine Obsidian-Wissensdatenbank: Technische Ansätze</span></a>
</div>
</li>
<li class="sidebar-item">
<div class="sidebar-item-container">
<a href="../Obsidian-Articles/Artikelbewertung durch LLM.html" class="sidebar-item-text sidebar-link">
<span class="menu-text">Artikelbewertung durch ein Large Language Model (LLM) - Ein Beispiel aus der Praxis</span></a>
</div>
</li>
</ul>
</li>
@ -815,7 +820,7 @@ Nutzer*innen zu helfen, die theoretischen Grundlagen nachvollziehbar zu machen.
<i class="callout-icon"></i>
</div>
<div class="callout-title-container flex-fill">
Zusammengefasst sollte die Dokumentation alle <strong>W-Fragen</strong> beantworten
<span class="screen-reader-only">Wichtig</span>Zusammengefasst sollte die Dokumentation alle <strong>W-Fragen</strong> beantworten
</div>
</div>
<div class="callout-body-container callout-body">
@ -857,7 +862,7 @@ Zusammengefasst sollte die Dokumentation alle <strong>W-Fragen</strong> beantwor
<i class="callout-icon"></i>
</div>
<div class="callout-title-container flex-fill">
Prinzip
<span class="screen-reader-only">Tipp</span>Prinzip
</div>
</div>
<div class="callout-body-container callout-body">
@ -908,7 +913,7 @@ Prinzip
<i class="callout-icon"></i>
</div>
<div class="callout-title-container flex-fill">
Prinzip
<span class="screen-reader-only">Tipp</span>Prinzip
</div>
</div>
<div class="callout-body-container callout-body">
@ -926,7 +931,7 @@ Prinzip
<i class="callout-icon"></i>
</div>
<div class="callout-title-container flex-fill">
Prinzip
<span class="screen-reader-only">Tipp</span>Prinzip
</div>
</div>
<div class="callout-body-container callout-body">
@ -936,12 +941,12 @@ Prinzip
<p>Achten Sie dabei auf Dateigrößen und Formate (Bilder als PNG/JPG, Diagramme wenn möglich als SVG für Langlebigkeit). Falls Diagramme der Architektur oder Workflow-Abbildungen hilfreich sind, können diese mit simplen Mitteln erstellt werden<a href="#fn3" class="footnote-ref" id="fnref3" role="doc-noteref"><sup>3</sup></a>.</p>
<div class="no-row-height column-margin column-container"><div id="fn3"><p><sup>3</sup>&nbsp;zur Not handgezeichnet und abfotografiert, besser jedoch mit Tools wie <a href="https://mermaid.js.org/" title="Sprache für Diagramme; kann automatisiert (z.b. durch pandoc, javascript im HTML, …) in Bilder gewandelt werden">mermaid.js</a> Diagrammen in <a href="https://en.wikipedia.org/wiki/Markdown" title="Mittlerweile DER Standard bei plaintext-Dokumenten">Markdown</a> oder <a href="https://graphviz.org/" title="Textuelle darstellung von Graphen; Standard-Unix-Tool; Auf vielen Systemen verfügbar und rendert zu pdf/svg">graphviz</a></p></div></div><p>Diese Visualisierungen sind jedoch nur dann einzusetzen, wenn sie echten Mehrwert bieten und ohne komplexe Build-Prozesse eingebunden werden können. Im Zweifel hat textuelle Beschreibung Vorrang, um nicht vom <strong>Prinzip “keep it simple”</strong> abzuweichen.</p>
<div class="callout callout-style-default callout-note callout-titled" title="Typische Nutzungsszenarien und Workflows">
<div class="callout-header d-flex align-content-center" data-bs-toggle="collapse" data-bs-target=".callout-5-contents" aria-controls="callout-5" aria-expanded="false" aria-label="Toggle callout">
<div class="callout-header d-flex align-content-center collapsed" data-bs-toggle="collapse" data-bs-target=".callout-5-contents" aria-controls="callout-5" aria-expanded="false" aria-label="Toggle callout">
<div class="callout-icon-container">
<i class="callout-icon"></i>
</div>
<div class="callout-title-container flex-fill">
Typische Nutzungsszenarien und Workflows
<span class="screen-reader-only">Hinweis</span>Typische Nutzungsszenarien und Workflows
</div>
<div class="callout-btn-toggle d-inline-block border-0 py-1 ps-1 pe-0 float-end"><i class="callout-toggle"></i></div>
</div>
@ -963,7 +968,7 @@ Typische Nutzungsszenarien und Workflows
<i class="callout-icon"></i>
</div>
<div class="callout-title-container flex-fill">
Prinzip
<span class="screen-reader-only">Tipp</span>Prinzip
</div>
</div>
<div class="callout-body-container callout-body">
@ -1036,7 +1041,7 @@ Prinzip
<i class="callout-icon"></i>
</div>
<div class="callout-title-container flex-fill">
FAIR4RS-Prinzipien für Software
<span class="screen-reader-only">Hinweis</span>FAIR4RS-Prinzipien für Software
</div>
</div>
<div class="callout-body-container callout-body">
@ -1048,7 +1053,7 @@ FAIR4RS-Prinzipien für Software
<i class="callout-icon"></i>
</div>
<div class="callout-title-container flex-fill">
ENDINGS-Prinzipien
<span class="screen-reader-only">Hinweis</span>ENDINGS-Prinzipien
</div>
</div>
<div class="callout-body-container callout-body">
@ -1101,7 +1106,7 @@ ENDINGS-Prinzipien
<i class="callout-icon"></i>
</div>
<div class="callout-title-container flex-fill">
Vorsicht bei Python-Notebooks
<span class="screen-reader-only">Warnung</span>Vorsicht bei Python-Notebooks
</div>
</div>
<div class="callout-body-container callout-body">
@ -1124,7 +1129,7 @@ Vorsicht bei Python-Notebooks
<i class="callout-icon"></i>
</div>
<div class="callout-title-container flex-fill">
Prinzip
<span class="screen-reader-only">Tipp</span>Prinzip
</div>
</div>
<div class="callout-body-container callout-body">
@ -1147,7 +1152,7 @@ Prinzip
<i class="callout-icon"></i>
</div>
<div class="callout-title-container flex-fill">
Prinzip
<span class="screen-reader-only">Tipp</span>Prinzip
</div>
</div>
<div class="callout-body-container callout-body">
@ -1167,7 +1172,7 @@ Prinzip
<i class="callout-icon"></i>
</div>
<div class="callout-title-container flex-fill">
Prinzip
<span class="screen-reader-only">Tipp</span>Prinzip
</div>
</div>
<div class="callout-body-container callout-body">
@ -1205,7 +1210,7 @@ Prinzip
<i class="callout-icon"></i>
</div>
<div class="callout-title-container flex-fill">
TODO
<span class="screen-reader-only">Wichtig</span>TODO
</div>
</div>
<div class="callout-body-container callout-body">
@ -1399,7 +1404,7 @@ Dresselhaus, Nicole, and GPT-4.5 deep research. 2025.
a.appendChild(i);
window.document.body.appendChild(a);
}
window.setColorSchemeToggle(window.hasAlternateSentinel())
setColorSchemeToggle(hasAlternateSentinel())
const icon = "";
const anchorJS = new window.AnchorJS();
anchorJS.options = {

71
dist/Writing/ner4all-case-study.html vendored
View File

@ -2,7 +2,7 @@
<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en"><head>
<meta charset="utf-8">
<meta name="generator" content="quarto-1.7.23">
<meta name="generator" content="quarto-1.8.17">
<meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">
@ -88,17 +88,19 @@ div.csl-indent {
<meta name="quarto:offset" content="../">
<script src="../site_libs/quarto-html/quarto.js" type="module"></script>
<script src="../site_libs/quarto-html/tabsets/tabsets.js" type="module"></script>
<script src="../site_libs/quarto-html/axe/axe-check.js" type="module"></script>
<script src="../site_libs/quarto-html/popper.min.js"></script>
<script src="../site_libs/quarto-html/tippy.umd.min.js"></script>
<script src="../site_libs/quarto-html/anchor.min.js"></script>
<link href="../site_libs/quarto-html/tippy.css" rel="stylesheet">
<link href="../site_libs/quarto-html/quarto-syntax-highlighting-dark-2c84ecb840a13f4c7993f9e5648f0c14.css" rel="stylesheet" class="quarto-color-scheme quarto-color-alternate" id="quarto-text-highlighting-styles">
<link href="../site_libs/quarto-html/quarto-syntax-highlighting-6cf5824034cebd0380a5b9c74c43f006.css" rel="stylesheet" class="quarto-color-scheme" id="quarto-text-highlighting-styles">
<link href="../site_libs/quarto-html/quarto-syntax-highlighting-ff1c8a91a872873ab9706226229f9e30.css" rel="stylesheet" class="quarto-color-scheme" id="quarto-text-highlighting-styles">
<link href="../site_libs/quarto-html/quarto-syntax-highlighting-dark-04b38c9dba5d7c0f1fe2b621b39e7e62.css" rel="stylesheet" class="quarto-color-scheme quarto-color-alternate" id="quarto-text-highlighting-styles">
<link href="../site_libs/quarto-html/quarto-syntax-highlighting-ff1c8a91a872873ab9706226229f9e30.css" rel="stylesheet" class="quarto-color-scheme-extra" id="quarto-text-highlighting-styles">
<script src="../site_libs/bootstrap/bootstrap.min.js"></script>
<link href="../site_libs/bootstrap/bootstrap-icons.css" rel="stylesheet">
<link href="../site_libs/bootstrap/bootstrap-ec71cb1e120c0dd41819aca960e74e38.min.css" rel="stylesheet" append-hash="true" class="quarto-color-scheme" id="quarto-bootstrap" data-mode="light">
<link href="../site_libs/bootstrap/bootstrap-dark-716ed94a23403968eaa6fe981e0cbf91.min.css" rel="stylesheet" append-hash="true" class="quarto-color-scheme quarto-color-alternate" id="quarto-bootstrap" data-mode="dark">
<link href="../site_libs/bootstrap/bootstrap-ec71cb1e120c0dd41819aca960e74e38.min.css" rel="stylesheet" append-hash="true" class="quarto-color-scheme-extra" id="quarto-bootstrap" data-mode="light">
<link href="../site_libs/bootstrap/bootstrap-9b56b6674ace31b1957ea5f5ef42286f.min.css" rel="stylesheet" append-hash="true" class="quarto-color-scheme" id="quarto-bootstrap" data-mode="light">
<link href="../site_libs/bootstrap/bootstrap-dark-3c8015a3c2181875b3e8a350495bd83c.min.css" rel="stylesheet" append-hash="true" class="quarto-color-scheme quarto-color-alternate" id="quarto-bootstrap" data-mode="dark">
<link href="../site_libs/bootstrap/bootstrap-9b56b6674ace31b1957ea5f5ef42286f.min.css" rel="stylesheet" append-hash="true" class="quarto-color-scheme-extra" id="quarto-bootstrap" data-mode="light">
<script id="quarto-search-options" type="application/json">{
"location": "navbar",
"copy-button": false,
@ -167,11 +169,11 @@ maintaining data privacy and reproducibility.
<meta name="citation_online_date" content="2025-05-05">
<meta name="citation_fulltext_html_url" content="https://drezil.de/Writing/ner4all-case-study.html">
<meta name="citation_language" content="en">
<meta name="citation_reference" content="citation_title=NER4all or Context is All You Need: Using LLMs for low-effort, high-performance NER on historical texts. A humanities informed approach;,citation_author=Torsten Hiltmann;,citation_author=Martin Dröge;,citation_author=Nicole Dresselhaus;,citation_author=Till Grallert;,citation_author=Melanie Althage;,citation_author=Paul Bayer;,citation_author=Sophie Eckenstaler;,citation_author=Koray Mendi;,citation_author=Jascha Marijn Schmitz;,citation_author=Philipp Schneider;,citation_author=Wiebke Sczeponik;,citation_author=Anica Skibba;,citation_publication_date=2025;,citation_cover_date=2025;,citation_year=2025;,citation_fulltext_html_url=https://arxiv.org/abs/2502.04351;">
<meta name="citation_reference" content="citation_title=NER4all or context is all you need: Using LLMs for low-effort, high-performance NER on historical texts. A humanities informed approach;,citation_author=Torsten Hiltmann;,citation_author=Martin Dröge;,citation_author=Nicole Dresselhaus;,citation_author=Till Grallert;,citation_author=Melanie Althage;,citation_author=Paul Bayer;,citation_author=Sophie Eckenstaler;,citation_author=Koray Mendi;,citation_author=Jascha Marijn Schmitz;,citation_author=Philipp Schneider;,citation_author=Wiebke Sczeponik;,citation_author=Anica Skibba;,citation_publication_date=2025;,citation_cover_date=2025;,citation_year=2025;,citation_fulltext_html_url=https://arxiv.org/abs/2502.04351;">
<meta name="citation_reference" content="citation_title=Run LLMs locally: 5 best methods (+ self-hosted AI starter kit);,citation_author=Mihai Farcas;,citation_publication_date=2024;,citation_cover_date=2024;,citation_year=2024;,citation_fulltext_html_url=https://blog.n8n.io/local-llm/;">
<meta name="citation_reference" content="citation_title=Tutorial on How to Integrate DeepSeek-R1 and the n8n Agent Development Framework;,citation_author=Aleksandar Haber;,citation_publication_date=2025-02-23;,citation_cover_date=2025-02-23;,citation_year=2025;,citation_fulltext_html_url=https://aleksandarhaber.com/tutorial-on-how-to-develop-private-and-secure-local-ai-agents-using-deepseek-r1-and-the-n8n-agent-development-framework/;">
<meta name="citation_reference" content="citation_title=DeepSeek-R1: Incentivizing Reasoning Capability in LLMs via Reinforcement Learning;,citation_author=undefined DeepSeek-AI;,citation_publication_date=2025;,citation_cover_date=2025;,citation_year=2025;,citation_fulltext_html_url=https://arxiv.org/abs/2501.12948;">
<meta name="citation_reference" content="citation_title=Cogito v1 Preview - Introducing IDA as a path to general superintelligence;,citation_author=Deep Cogito;,citation_publication_date=2025;,citation_cover_date=2025;,citation_year=2025;,citation_fulltext_html_url=https://www.deepcogito.com/research/cogito-v1-preview;">
<meta name="citation_reference" content="citation_title=Tutorial on how to integrate DeepSeek-R1 and the n8n agent development framework;,citation_author=Aleksandar Haber;,citation_publication_date=2025-02-23;,citation_cover_date=2025-02-23;,citation_year=2025;,citation_fulltext_html_url=https://aleksandarhaber.com/tutorial-on-how-to-develop-private-and-secure-local-ai-agents-using-deepseek-r1-and-the-n8n-agent-development-framework/;">
<meta name="citation_reference" content="citation_title=DeepSeek-R1: Incentivizing reasoning capability in LLMs via reinforcement learning;,citation_author=undefined DeepSeek-AI;,citation_publication_date=2025;,citation_cover_date=2025;,citation_year=2025;,citation_fulltext_html_url=https://arxiv.org/abs/2501.12948;">
<meta name="citation_reference" content="citation_title=Cogito v1 preview - introducing IDA as a path to general superintelligence;,citation_author=Deep Cogito;,citation_publication_date=2025;,citation_cover_date=2025;,citation_year=2025;,citation_fulltext_html_url=https://www.deepcogito.com/research/cogito-v1-preview;">
</head>
<body class="nav-sidebar docked nav-fixed quarto-light"><script id="quarto-html-before-body" type="application/javascript">
@ -192,7 +194,7 @@ maintaining data privacy and reproducibility.
toggleBodyColorMode(bsSheetEl);
}
}
window.setColorSchemeToggle = (alternate) => {
const setColorSchemeToggle = (alternate) => {
const toggles = window.document.querySelectorAll('.quarto-color-scheme-toggle');
for (let i=0; i < toggles.length; i++) {
const toggle = toggles[i];
@ -225,7 +227,7 @@ maintaining data privacy and reproducibility.
}
manageTransitions('#quarto-margin-sidebar .nav-link', true);
// Switch the toggles
window.setColorSchemeToggle(alternate)
setColorSchemeToggle(alternate)
// Hack to workaround the fact that safari doesn't
// properly recolor the scrollbar when toggling (#1455)
if (navigator.userAgent.indexOf('Safari') > 0 && navigator.userAgent.indexOf('Chrome') == -1) {
@ -265,7 +267,7 @@ maintaining data privacy and reproducibility.
const isFileUrl = () => {
return window.location.protocol === 'file:';
}
window.hasAlternateSentinel = () => {
const hasAlternateSentinel = () => {
let styleSentinel = getColorSchemeSentinel();
if (styleSentinel !== null) {
return styleSentinel === "alternate";
@ -293,7 +295,7 @@ maintaining data privacy and reproducibility.
const baseTheme = document.querySelector('#giscus-base-theme')?.value ?? 'light';
const alternateTheme = document.querySelector('#giscus-alt-theme')?.value ?? 'dark';
let newTheme = '';
if(darkModeDefault) {
if(authorPrefersDark) {
newTheme = isAlternate ? baseTheme : alternateTheme;
} else {
newTheme = isAlternate ? alternateTheme : baseTheme;
@ -316,17 +318,20 @@ maintaining data privacy and reproducibility.
changeGiscusTheme();
}
};
const authorPrefersDark = false;
const queryPrefersDark = window.matchMedia('(prefers-color-scheme: dark)');
const darkModeDefault = queryPrefersDark.matches;
document.querySelector('link.quarto-color-scheme-extra').rel = 'disabled-stylesheet';
document.querySelector('link#quarto-text-highlighting-styles.quarto-color-scheme-extra').rel = 'disabled-stylesheet';
document.querySelector('link#quarto-bootstrap.quarto-color-scheme-extra').rel = 'disabled-stylesheet';
let localAlternateSentinel = darkModeDefault ? 'alternate' : 'default';
// Dark / light mode switch
window.quartoToggleColorScheme = () => {
// Read the current dark / light value
let toAlternate = !window.hasAlternateSentinel();
let toAlternate = !hasAlternateSentinel();
toggleColorMode(toAlternate);
setStyleSentinel(toAlternate);
toggleGiscusIfUsed(toAlternate, darkModeDefault);
window.dispatchEvent(new Event('resize'));
};
queryPrefersDark.addEventListener("change", e => {
if(window.localStorage.getItem("quarto-color-scheme") !== null)
@ -337,7 +342,7 @@ maintaining data privacy and reproducibility.
toggleGiscusIfUsed(alternate, darkModeDefault);
});
// Switch to dark mode if need be
if (window.hasAlternateSentinel()) {
if (hasAlternateSentinel()) {
toggleColorMode(true);
} else {
toggleColorMode(false);
@ -349,6 +354,8 @@ maintaining data privacy and reproducibility.
<nav class="navbar navbar-expand-lg " data-bs-theme="dark">
<div class="navbar-container container-fluid">
<div class="navbar-brand-container mx-auto">
<a href="../index.html" class="navbar-brand navbar-brand-logo">
</a>
<a class="navbar-brand" href="../index.html">
<span class="navbar-title">Nicole Dresselhaus</span>
</a>
@ -360,12 +367,12 @@ maintaining data privacy and reproducibility.
<div class="collapse navbar-collapse" id="navbarCollapse">
<ul class="navbar-nav navbar-nav-scroll me-auto">
<li class="nav-item">
<a class="nav-link" href="../index.html"> <i class="bi bi-house" role="img">
<a class="nav-link active" href="../index.html" aria-current="page"> <i class="bi bi-house" role="img">
</i>
<span class="menu-text">Home</span></a>
</li>
<li class="nav-item">
<a class="nav-link active" href="../About/index.html" aria-current="page"> <i class="bi bi-file-person" role="img">
<a class="nav-link" href="../About/index.html"> <i class="bi bi-file-person" role="img">
</i>
<span class="menu-text">About</span></a>
</li>
@ -403,6 +410,10 @@ maintaining data privacy and reproducibility.
<div id="quarto-content" class="quarto-container page-columns page-rows-contents page-layout-article page-navbar">
<!-- sidebar -->
<nav id="quarto-sidebar" class="sidebar collapse collapse-horizontal quarto-sidebar-collapse-item sidebar-navigation docked overflow-auto">
<div class="pt-lg-2 mt-2 text-left sidebar-header">
<a href="../index.html" class="sidebar-logo-link">
</a>
</div>
<div class="sidebar-menu-container">
<ul class="list-unstyled mt-1">
<li class="sidebar-item sidebar-item-section">
@ -446,12 +457,6 @@ maintaining data privacy and reproducibility.
<a href="../Writing/Obsidian-RAG.html" class="sidebar-item-text sidebar-link">
<span class="menu-text">RAG für eine Obsidian-Wissensdatenbank: Technische Ansätze</span></a>
</div>
</li>
<li class="sidebar-item">
<div class="sidebar-item-container">
<a href="../Obsidian-Articles/Artikelbewertung durch LLM.html" class="sidebar-item-text sidebar-link">
<span class="menu-text">Artikelbewertung durch ein Large Language Model (LLM) - Ein Beispiel aus der Praxis</span></a>
</div>
</li>
</ul>
</li>
@ -801,21 +806,21 @@ maintaining data privacy and reproducibility.
<p>To reproduce this solution, you will need a machine with an <strong>NVIDIA GPU</strong> and the following software components installed:</p>
<ul>
<li><p><strong>n8n (v1.</strong>x** or later)** – the workflow automation tool. You can install n8n via npm, Docker, or use the desktop app. For a server environment, Docker is convenient. For example, to run n8n with Docker:</p>
<div class="sourceCode" id="cb1"><pre class="sourceCode bash code-with-copy"><code class="sourceCode bash"><span id="cb1-1"><a href="#cb1-1" aria-hidden="true" tabindex="-1"></a><span class="ex">docker</span> run <span class="at">-it</span> <span class="at">--rm</span> <span class="dt">\</span></span>
<div class="code-copy-outer-scaffold"><div class="sourceCode" id="cb1"><pre class="sourceCode bash code-with-copy"><code class="sourceCode bash"><span id="cb1-1"><a href="#cb1-1" aria-hidden="true" tabindex="-1"></a><span class="ex">docker</span> run <span class="at">-it</span> <span class="at">--rm</span> <span class="dt">\</span></span>
<span id="cb1-2"><a href="#cb1-2" aria-hidden="true" tabindex="-1"></a> <span class="at">-p</span> 5678:5678 <span class="dt">\</span></span>
<span id="cb1-3"><a href="#cb1-3" aria-hidden="true" tabindex="-1"></a> <span class="at">-v</span> ~/.n8n:/home/node/.n8n <span class="dt">\</span></span>
<span id="cb1-4"><a href="#cb1-4" aria-hidden="true" tabindex="-1"></a> n8nio/n8n:latest</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<span id="cb1-4"><a href="#cb1-4" aria-hidden="true" tabindex="-1"></a> n8nio/n8n:latest</span></code></pre></div><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></div>
<p>This exposes n8n on <code>http://localhost:5678</code> for the web interface. (If you use Docker and plan to connect to a host-running Ollama, start the container with <code>--network=host</code> to allow access to the Ollama API on localhost.)</p></li>
<li><p><strong>Ollama (v0.x*)</strong> – an LLM runtime that serves models via an HTTP API. Installing Ollama is straightforward: download the installer for your OS from the official site (Linux users can run the one-line script <code>curl -sSL https://ollama.com/install.sh | sh</code>). After installation, start the Ollama server (daemon) by running:</p>
<div class="sourceCode" id="cb2"><pre class="sourceCode bash code-with-copy"><code class="sourceCode bash"><span id="cb2-1"><a href="#cb2-1" aria-hidden="true" tabindex="-1"></a><span class="ex">ollama</span> serve</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="code-copy-outer-scaffold"><div class="sourceCode" id="cb2"><pre class="sourceCode bash code-with-copy"><code class="sourceCode bash"><span id="cb2-1"><a href="#cb2-1" aria-hidden="true" tabindex="-1"></a><span class="ex">ollama</span> serve</span></code></pre></div><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></div>
<p>This will launch the service listening on port 11434. You can verify it’s running by opening <code>http://localhost:11434</code> in a browser – it should respond with “Ollama is running”. <em>Note:</em> Ensure your system has recent NVIDIA drivers and CUDA support if using GPU. Ollama supports NVIDIA GPUs with compute capability ≥5.0 (the A100 is well above this). Use <code>nvidia-smi</code> to confirm your GPU is recognized. If everything is set up, Ollama will automatically use the GPU for model inference (falling back to CPU if none available).</p></li>
<li><p><strong>LLM Model (14B class):</strong> Finally, download at least one large language model to use for NER. You have a few options here, and you can “pull” them via Ollama’s CLI:</p>
<ul>
<li><p><em>DeepSeek-R1 14B:</em> A 14.8B-parameter model distilled from larger reasoning models (based on Qwen architecture). It’s optimized for reasoning tasks and compares to OpenAI’s models in quality. Pull it with:</p>
<div class="sourceCode" id="cb3"><pre class="sourceCode bash code-with-copy"><code class="sourceCode bash"><span id="cb3-1"><a href="#cb3-1" aria-hidden="true" tabindex="-1"></a><span class="ex">ollama</span> pull deepseek-r1:14b</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="code-copy-outer-scaffold"><div class="sourceCode" id="cb3"><pre class="sourceCode bash code-with-copy"><code class="sourceCode bash"><span id="cb3-1"><a href="#cb3-1" aria-hidden="true" tabindex="-1"></a><span class="ex">ollama</span> pull deepseek-r1:14b</span></code></pre></div><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></div>
<p>This downloads ~9 GB of data (the quantized weights). If you have a very strong GPU (e.g.&nbsp;A100 80GB), you could even try <code>deepseek-r1:70b</code> (~43 GB), but 14B is a good balance for our use-case. DeepSeek-R1 is licensed MIT and designed to run locally with no restrictions.</p></li>
<li><p><em>Cogito 14B:</em> A 14B “hybrid reasoning” model by Deep Cogito, known for excellent instruction-following and multilingual capability. Pull it with:</p>
<div class="sourceCode" id="cb4"><pre class="sourceCode bash code-with-copy"><code class="sourceCode bash"><span id="cb4-1"><a href="#cb4-1" aria-hidden="true" tabindex="-1"></a><span class="ex">ollama</span> pull cogito:14b</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="code-copy-outer-scaffold"><div class="sourceCode" id="cb4"><pre class="sourceCode bash code-with-copy"><code class="sourceCode bash"><span id="cb4-1"><a href="#cb4-1" aria-hidden="true" tabindex="-1"></a><span class="ex">ollama</span> pull cogito:14b</span></code></pre></div><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></div>
<p>Cogito-14B is also ~9 GB (quantized) and supports an extended context window up to <strong>128k tokens</strong> – which is extremely useful if you plan to analyze very long documents without chunking. It’s trained in 30+ languages and tuned to follow complex instructions, which can help in structured output tasks like ours.</p></li>
<li><p><em>Others:</em> Ollama offers many models (LLaMA 2 variants, Mistral, etc.). For instance, <code>ollama pull llama2:13b</code> would get a LLaMA-2 13B model. These can work, but for best results in NER with no fine-tuning, we suggest using one of the above well-instructed models. If your hardware is limited, you could try a 7-8B model (e.g., <code>deepseek-r1:7b</code> or <code>cogito:8b</code>), which download faster and use ~4–5 GB VRAM, at the cost of some accuracy. In CPU-only scenarios, even a 1.5B model is available – it will run very slowly and likely miss more entities, but it proves the pipeline can work on minimal hardware.</p></li>
</ul></li>
@ -828,10 +833,10 @@ maintaining data privacy and reproducibility.
<section id="webhook-input-for-entities-and-text" class="level3">
<h3 class="anchored" data-anchor-id="webhook-input-for-entities-and-text">1. Webhook Input for Entities and Text</h3>
<p>Start by creating a <strong>Webhook trigger</strong> node in n8n. This will provide a URL (endpoint) that you can send a request to. Configure it to accept a POST request containing the necessary inputs. For example, we expect the request JSON to look like:</p>
<div class="sourceCode" id="cb5"><pre class="sourceCode json code-with-copy"><code class="sourceCode json"><span id="cb5-1"><a href="#cb5-1" aria-hidden="true" tabindex="-1"></a><span class="fu">{</span></span>
<div class="code-copy-outer-scaffold"><div class="sourceCode" id="cb5"><pre class="sourceCode json code-with-copy"><code class="sourceCode json"><span id="cb5-1"><a href="#cb5-1" aria-hidden="true" tabindex="-1"></a><span class="fu">{</span></span>
<span id="cb5-2"><a href="#cb5-2" aria-hidden="true" tabindex="-1"></a> <span class="dt">"entities"</span><span class="fu">:</span> <span class="st">"PER, ORG, LOC"</span><span class="fu">,</span></span>
<span id="cb5-3"><a href="#cb5-3" aria-hidden="true" tabindex="-1"></a> <span class="dt">"text"</span><span class="fu">:</span> <span class="st">"John Doe visited Berlin in 1921 and met with the Board of Acme Corp."</span></span>
<span id="cb5-4"><a href="#cb5-4" aria-hidden="true" tabindex="-1"></a><span class="fu">}</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<span id="cb5-4"><a href="#cb5-4" aria-hidden="true" tabindex="-1"></a><span class="fu">}</span></span></code></pre></div><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></div>
<p>Here, <code>"entities"</code> is a simple comma-separated string of entity types (you could also accept an array or a more detailed schema; for simplicity we use the format used in the paper: PER for person, LOC for location, ORG for organization). The <code>"text"</code> field contains the content to analyze. In a real scenario, the text could be much longer or might be sent as a file. If it’s a file, one approach is to send it as form-data and use n8n’s <strong>Read Binary File</strong> + <strong>Move Binary Data</strong> nodes to get it into text form. Alternatively, send a URL in the JSON and use an HTTP Request node in the workflow to fetch the content. The key is that by the end of this step, we have the raw text and the list of entity labels available in the n8n workflow as variables.</p>
</section>
<section id="constructing-the-llm-prompt" class="level3">
@ -983,7 +988,7 @@ LLM-Based NER with N8n and Ollama.”</span> May 5, 2025. <a href="https://drezi
a.appendChild(i);
window.document.body.appendChild(a);
}
window.setColorSchemeToggle(window.hasAlternateSentinel())
setColorSchemeToggle(hasAlternateSentinel())
const icon = "";
const anchorJS = new window.AnchorJS();
anchorJS.options = {