179 lines
6.4 KiB
TeX
179 lines
6.4 KiB
TeX
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\newcommand\exampleend{\hfill$\diamond$}
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% ##### DCJ stuff #####
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\newcommand\dcaj{double cut and join\xspace}
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\newcommand\dcjindel{d_{\DCJ}^{id}}
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\newcommand\dcj{d_{\DCJ}}
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\renewcommand\gg{\mathcal G}
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\newcommand\del{\mathcal A}
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\newcommand\ins{\mathcal B}
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\newcommand\clean{\varnothing}
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\newcommand\gdel{\mathcal G_{\!A}}
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\newcommand\gins{\mathcal G_{\!B}}
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\newcommand\ag{\AG(A,B)}
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\renewcommand\r{\lambda} % # runs
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\newcommand\R{\Lambda} % # runs after clustering
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\newcommand\dr{\Delta\r}
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\newcommand\drr{\Delta\r^{\!\rho}}
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\newcommand\DR{\Delta\R}
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\newcommand\DRR{\Delta\R^{\!\rho}}
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%\newcommand\lab[1]{\lambda(#1)}
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\newcommand\redu[1]{\left.#1\right|_\mathcal G}
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\newcommand\h[1]{#1^h}
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\renewcommand\t[1]{#1^t}
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\renewcommand\a{$A$\xspace}
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\renewcommand\b{$B$\xspace}
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\renewcommand\O{\mathcal O}
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\renewcommand\AA{$A\!A$\xspace}
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\newcommand\AB{$A\!B$\xspace}
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\newcommand\BA{$B\!A$\xspace}
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\newcommand\BB{$B\!B$\xspace}
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\newcommand\ab{\del\ins}
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\newcommand\ba{\ins\del}
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\def\aa{A\!A}
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\def\bb{B\!B}
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\def\AAab{A\!A_{\!\del\!\ins}}
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\def\AAa{A\!A_{\!\del}}
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\def\AAb{A\!A_{\ins}}
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\def\BBab{B\!B_{\!\!\del\!\ins}}
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\def\BBa{B\!B_{\!\!\del}}
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\def\BBb{B\!B_{\ins}}
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\def\ABab{A\!B_{\!\!\del\!\ins}}
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\def\ABba{A\!B_{\ins\!\del}}
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\def\ABa{A\!B_{\!\!\del}}
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\def\ABb{A\!B_\ins}
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\def\ABm{A\!B_\bullet}
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\def\AAo{A\!A_{\!\varnothing}}
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\def\ABo{A\!B_{\!\varnothing}}
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\def\BBo{B\!B_{\!\varnothing}}
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\def\xx{A\!B_\times}
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\def\aba{\del\!\gr{\ins\!\del}}
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\def\bab{\ins\!\gr{\del\!\ins}}
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\newcommand\clusterize{accumulate\xspace}
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\newcommand\clustering{accumulating\xspace} %aggregate, unite/unifying
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\newcommand\clusterized{accumulated\xspace}
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\newcommand\clusterization{accumulation\xspace}
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\renewcommand\v[1]{V(#1)}
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\newcommand\vset[2]{\v{#1}=\set{#2}}
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% ##### math #####
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\DeclareMathOperator\AG{AG}
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\DeclareMathOperator\DCJ{DCJ}
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%\DeclareMathOperator\V{V}
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\newcommand\set[1]{\{#1\}}
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\newcommand\corresponds{\mathrel{\widehat{=}}}
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\newcommand\gleich{=\joinrel=}
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\newcommand\subargmax[1]{\lower0.6em\hbox{$\stackrel{\displaystyle\argmax\ }{_{#1}}$}}
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\newcommand\subtexting[2]{\lower0.58em\hbox{$\stackrel{\displaystyle#1}{_{#2}}$}}
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% \newcommand\Uu{\mathcal U_{{}_{\Box}}}
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% \newcommand\Us{\mathcal U_{\triangleleft}}
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% \DeclareMathOperator{\isE}{\scalebox{1.5}[1]{\rotatebox[origin=c]{180}{$\exists$}}}
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% \DeclareMathOperator{\notE}{\scalebox{1.5}[1]{\rotatebox[origin=c]{180}{$\nexists$}}}
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%\DeclareMathOperator{\gc}{\scalebox{-1.5}[1]{$\exists$}}
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%\DeclareMathOperator{\ngc}{\scalebox{-1.5}[1]{$\nexists$}}
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\newcommand\edge[2]{\{#1,#2\}}
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\newcommand\dedge[2]{(#1,#2)}
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% \renewcommand{\varnothing}{\{\,\}}
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\newcommand{\bo}[1]{#1_{_{\Box}}}
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\newcommand{\tri}[1]{#1_\triangleleft}
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\newcommand{\pib}{\bo\pi}
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\newcommand{\pit}{\tri\pi}
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\newcommand\meng{\{1,2,\ldots,N\}}
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\newcommand{\abs}[1]{\ensuremath{\lvert #1 \rvert}} % Absolutbetrag. Statt |a| verwenden.
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%\newcommand\qed{\qquad\Box}
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\newcommand\toinf[1][n]{\toconv{#1}\infty}
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\renewcommand\epsilon\varepsilon
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\renewcommand\rho\varrho
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%proof:
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\renewcommand\lq{\text{\textgravedbl}\!\!}\renewcommand\rq{\!\!\text{\textacutedbl}}
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% ##### tables #####
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\newcommand\rl[1]{\multicolumn{1}{r|}{#1}} % item|
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\renewcommand\ll[1]{\multicolumn{1}{|r}{#1}} % |item
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% \newcommand\cc[1]{\multicolumn{1}{|c|}{#1}} % |item|
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\newcommand\lc[2]{\multicolumn{#1}{|c|}{#2}} %
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\newcommand\cc[1]{\multicolumn{1}{c}{#1}}
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% \renewcommand{\arraystretch}{1.2} % Tabellenzeilen ein bischen h?her machen.
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\newcommand\m[2]{\multirow{#1}{*}{$#2$}}
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% ##### Text symbole #####
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% \newcommand\subdot[1]{\lower0.5em\hbox{$\stackrel{\displaystyle #1}{.}$}}
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% \newcommand\subsubdot[1]{\lower0.5em\hbox{$\stackrel{#1}{.}$}}
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\newcommand\stern\circledast
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% ##### Textersetzung (Abk?rzungen) #####
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% \newcommand\na{\textsl{Naive Algorithm}\xspace}
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% \newcommand\sh{\textsl{Simple Heuristic}\xspace}
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% \newcommand\ea{\textsl{Exact Algorithm}\xspace}
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% \newcommand\rec{\textsl{Reconstruction Algorithm}\xspace}
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\newcommand\rfe{\textit{R.~felis}\xspace}
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\newcommand\rma{\textit{R.~massiliae}\xspace}
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\newcommand\raf{\textit{R.~africae}\xspace}
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\newcommand\rco{\textit{R.~conorii}\xspace}
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\newcommand\rpr{\textit{R.~prowazekii}\xspace}
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\newcommand\rty{\textit{R.~typhi}\xspace}
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\newcommand\rbe{\textit{R.~bellii}\xspace}
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\newcommand\ric{\textit{Rickettsia}\xspace}
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\newcommand\rf{\textit{fel}\xspace}
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\newcommand\rms{\textit{mas}\xspace}
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\newcommand\ra{\textit{afr}\xspace}
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\newcommand\rc{\textit{con}\xspace}
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\newcommand\rp{\textit{pro}\xspace}
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\newcommand\rt{\textit{typ}\xspace}
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\newcommand\rb{\textit{bel}\xspace}
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\newcommand\eg{e.\,g.\ } %\newcommand{\zB}{z.\,B.\ }
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\newcommand\resp{resp.\ } %\newcommand{\bzw}{bzw.\ }%\newcommand{\iAllg}{i.\,Allg.\ }
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\newcommand\ie{i.\,e.\ }%\renewcommand{\dh}{d.\,h.\ }
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\newcommand\etal{~\textit{et al.\xspace}}
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% \newcommand\etalcite[1]{~\textit{et al.} \cite{#1}\xspace}
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% Abkuerzung fuer URLs: \hrefn{url}, Vorsicht bei Tilden (~) in den URLs
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\newcommand{\hrefn}[1]{\href{#1}{#1}}
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\newcommand{\myquote}[1]{\glqq{}#1\grqq{}} % richtige Anfuehrungszeichen: ,, Bla ''
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% \newcommand{\str}[1]{{\tt{}#1}} % einheitliche formatierung fuer zeichenketten
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% ##### draft #####
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\newcommand{\ignore}[1]{}
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\newcommand\info[1]{\marginpar{\begin{center}#1\end{center}}}
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\newcommand\note{\marginpar{\begin{center}$\longleftarrow$\end{center}}}
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\newcommand\picmis[1]{$$\boxed{\mbox{\ttfamily picture #1}}$$}
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%Todo am Rand notieren
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\begin{comment}
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% DONE WITH \usepackage{todo}
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\newcommand{\todo}[1]{%
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\ensuremath{\bigstar}%
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\marginpar{%
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\begin{flushleft}%
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\vspace{-1.5\baselineskip}%
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{\small TODO\ \ensuremath{\bigstar}\\#1}%
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\end{flushleft}%
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}%
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}%
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\end{comment}
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\newcommand\opdown[2]{\lower0.75em\hbox{$\stackrel{\displaystyle#1}{\scriptstyle#2}$}}
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\newcommand\toconv[2]{\;\lower0.5em\hbox{$\stackrel{\longrightarrow}{\scriptstyle#1\to#2}$}}
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\newcommand\wildcard[1]{\fbox{\ttfamily Platzhalter: #1}}
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\newcommand{\sd}{\\ \hspace*{\fill} [SD]\hspace*{1cm}}
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\newcommand{\jb}{\\ \hspace*{\fill} [JB]\hspace*{1cm}}
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\newcommand{\jbsd}{\\ \hspace*{\fill} [JB,~SD]\hspace*{1cm}}
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\newcommand{\argmax}{\textrm{argmax}}
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\newcommand{\argmin}{\textrm{argmin}}
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\newcommand{\matlab}{\lstset{
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language=Matlab,
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basicstyle=\small\sffamily,
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breaklines=true,
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frame=tblr,
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backgroundcolor=\color{yellow!20},
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numbers=none,
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numbersep=4pt,
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numberstyle=\small,
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showstringspaces=false,
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keywordstyle=\color{blue}\bfseries
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}}
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\newcommand\data[1]{\marginpar{\vspace{-35pt}\begin{center}
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\includegraphics[width=1cm]{img/cd}
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\end{center}\vspace{-15pt}\centering\footnotesize\texttt{#1}}}
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