From e77cd02c214cf966fb9fdbdfaa61f1df05b12467 Mon Sep 17 00:00:00 2001
From: Stefan Dresselhaus <sdressel@techfak.uni-bielefeld.de>
Date: Fri, 8 Jun 2018 10:57:18 +0200
Subject: [PATCH] added example of manual tuned environment

---
 environment2.json | 561 ++++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 561 insertions(+)
 create mode 100644 environment2.json

diff --git a/environment2.json b/environment2.json
new file mode 100644
index 0000000..a09a052
--- /dev/null
+++ b/environment2.json
@@ -0,0 +1,561 @@
+{
+    "maxCompound": 30,
+    "metabolismIteration": 100,
+    "possibleEnzymes": [
+        {
+            "dominance": null,
+            "enzymeName": "Substrate PPM -> GenericCompound 1",
+            "substrateRequirements": [],
+            "synthesis": [
+                [
+                    {
+                        "contents": [],
+                        "tag": "Substrate"
+                    },
+                    -1
+                ],
+                [
+                    {
+                        "contents": 1,
+                        "tag": "GenericCompound"
+                    },
+                    1
+                ]
+            ]
+        },
+        {
+            "dominance": null,
+            "enzymeName": "Substrate PPM -> GenericCompound 8",
+            "substrateRequirements": [],
+            "synthesis": [
+                [
+                    {
+                        "contents": [],
+                        "tag": "Substrate"
+                    },
+                    -1
+                ],
+                [
+                    {
+                        "contents": 8,
+                        "tag": "GenericCompound"
+                    },
+                    1
+                ]
+            ]
+        },
+        {
+            "dominance": null,
+            "enzymeName": "Substrate PPM -> GenericCompound 17",
+            "substrateRequirements": [],
+            "synthesis": [
+                [
+                    {
+                        "contents": [],
+                        "tag": "Substrate"
+                    },
+                    -1
+                ],
+                [
+                    {
+                        "contents": 17,
+                        "tag": "GenericCompound"
+                    },
+                    1
+                ]
+            ]
+        },
+        {
+            "dominance": null,
+            "enzymeName": "GenericCompound 1 -> GenericCompound 2",
+            "substrateRequirements": [],
+            "synthesis": [
+                [
+                    {
+                        "contents": 1,
+                        "tag": "GenericCompound"
+                    },
+                    -1
+                ],
+                [
+                    {
+                        "contents": 2,
+                        "tag": "GenericCompound"
+                    },
+                    1
+                ]
+            ]
+        },
+        {
+            "dominance": null,
+            "enzymeName": "GenericCompound 1 -> GenericCompound 3",
+            "substrateRequirements": [],
+            "synthesis": [
+                [
+                    {
+                        "contents": 1,
+                        "tag": "GenericCompound"
+                    },
+                    -1
+                ],
+                [
+                    {
+                        "contents": 3,
+                        "tag": "GenericCompound"
+                    },
+                    1
+                ]
+            ]
+        },
+        {
+            "dominance": null,
+            "enzymeName": "GenericCompound 1 -> GenericCompound 6",
+            "substrateRequirements": [],
+            "synthesis": [
+                [
+                    {
+                        "contents": 1,
+                        "tag": "GenericCompound"
+                    },
+                    -1
+                ],
+                [
+                    {
+                        "contents": 6,
+                        "tag": "GenericCompound"
+                    },
+                    1
+                ]
+            ]
+        },
+        {
+            "dominance": null,
+            "enzymeName": "GenericCompound 6 -> GenericCompound 7",
+            "substrateRequirements": [],
+            "synthesis": [
+                [
+                    {
+                        "contents": 6,
+                        "tag": "GenericCompound"
+                    },
+                    -1
+                ],
+                [
+                    {
+                        "contents": 7,
+                        "tag": "GenericCompound"
+                    },
+                    1
+                ]
+            ]
+        },
+        {
+            "dominance": null,
+            "enzymeName": "GenericCompound 8 -> GenericCompound 9",
+            "substrateRequirements": [],
+            "synthesis": [
+                [
+                    {
+                        "contents": 8,
+                        "tag": "GenericCompound"
+                    },
+                    -1
+                ],
+                [
+                    {
+                        "contents": 9,
+                        "tag": "GenericCompound"
+                    },
+                    1
+                ]
+            ]
+        },
+        {
+            "dominance": null,
+            "enzymeName": "GenericCompound 8 -> GenericCompound 10",
+            "substrateRequirements": [],
+            "synthesis": [
+                [
+                    {
+                        "contents": 8,
+                        "tag": "GenericCompound"
+                    },
+                    -1
+                ],
+                [
+                    {
+                        "contents": 10,
+                        "tag": "GenericCompound"
+                    },
+                    1
+                ]
+            ]
+        },
+        {
+            "dominance": null,
+            "enzymeName": "GenericCompound 8 -> GenericCompound 12",
+            "substrateRequirements": [],
+            "synthesis": [
+                [
+                    {
+                        "contents": 8,
+                        "tag": "GenericCompound"
+                    },
+                    -1
+                ],
+                [
+                    {
+                        "contents": 12,
+                        "tag": "GenericCompound"
+                    },
+                    1
+                ]
+            ]
+        },
+        {
+            "dominance": null,
+            "enzymeName": "GenericCompound 8 -> GenericCompound 15",
+            "substrateRequirements": [],
+            "synthesis": [
+                [
+                    {
+                        "contents": 8,
+                        "tag": "GenericCompound"
+                    },
+                    -1
+                ],
+                [
+                    {
+                        "contents": 15,
+                        "tag": "GenericCompound"
+                    },
+                    1
+                ]
+            ]
+        },
+        {
+            "dominance": null,
+            "enzymeName": "GenericCompound 10 -> GenericCompound 11",
+            "substrateRequirements": [],
+            "synthesis": [
+                [
+                    {
+                        "contents": 10,
+                        "tag": "GenericCompound"
+                    },
+                    -1
+                ],
+                [
+                    {
+                        "contents": 11,
+                        "tag": "GenericCompound"
+                    },
+                    1
+                ]
+            ]
+        },
+        {
+            "dominance": null,
+            "enzymeName": "GenericCompound 15 -> GenericCompound 16",
+            "substrateRequirements": [],
+            "synthesis": [
+                [
+                    {
+                        "contents": 15,
+                        "tag": "GenericCompound"
+                    },
+                    -1
+                ],
+                [
+                    {
+                        "contents": 16,
+                        "tag": "GenericCompound"
+                    },
+                    1
+                ]
+            ]
+        },
+        {
+            "dominance": null,
+            "enzymeName": "GenericCompound 17 -> GenericCompound 18",
+            "substrateRequirements": [],
+            "synthesis": [
+                [
+                    {
+                        "contents": 17,
+                        "tag": "GenericCompound"
+                    },
+                    -1
+                ],
+                [
+                    {
+                        "contents": 18,
+                        "tag": "GenericCompound"
+                    },
+                    1
+                ]
+            ]
+        },
+        {
+            "dominance": null,
+            "enzymeName": "GenericCompound 17 -> GenericCompound 19",
+            "substrateRequirements": [],
+            "synthesis": [
+                [
+                    {
+                        "contents": 17,
+                        "tag": "GenericCompound"
+                    },
+                    -1
+                ],
+                [
+                    {
+                        "contents": 19,
+                        "tag": "GenericCompound"
+                    },
+                    1
+                ]
+            ]
+        },
+        {
+            "dominance": null,
+            "enzymeName": "GenericCompound 17 -> GenericCompound 25",
+            "substrateRequirements": [],
+            "synthesis": [
+                [
+                    {
+                        "contents": 17,
+                        "tag": "GenericCompound"
+                    },
+                    -1
+                ],
+                [
+                    {
+                        "contents": 25,
+                        "tag": "GenericCompound"
+                    },
+                    1
+                ]
+            ]
+        },
+        {
+            "dominance": null,
+            "enzymeName": "GenericCompound 19 -> GenericCompound 20",
+            "substrateRequirements": [],
+            "synthesis": [
+                [
+                    {
+                        "contents": 19,
+                        "tag": "GenericCompound"
+                    },
+                    -1
+                ],
+                [
+                    {
+                        "contents": 20,
+                        "tag": "GenericCompound"
+                    },
+                    1
+                ]
+            ]
+        },
+        {
+            "dominance": null,
+            "enzymeName": "GenericCompound 20 -> GenericCompound 21",
+            "substrateRequirements": [],
+            "synthesis": [
+                [
+                    {
+                        "contents": 20,
+                        "tag": "GenericCompound"
+                    },
+                    -1
+                ],
+                [
+                    {
+                        "contents": 21,
+                        "tag": "GenericCompound"
+                    },
+                    1
+                ]
+            ]
+        },
+        {
+            "dominance": null,
+            "enzymeName": "GenericCompound 25 -> GenericCompound 26",
+            "substrateRequirements": [],
+            "synthesis": [
+                [
+                    {
+                        "contents": 25,
+                        "tag": "GenericCompound"
+                    },
+                    -1
+                ],
+                [
+                    {
+                        "contents": 26,
+                        "tag": "GenericCompound"
+                    },
+                    1
+                ]
+            ]
+        },
+        {
+            "dominance": null,
+            "enzymeName": "GenericCompound 25 -> GenericCompound 27",
+            "substrateRequirements": [],
+            "synthesis": [
+                [
+                    {
+                        "contents": 25,
+                        "tag": "GenericCompound"
+                    },
+                    -1
+                ],
+                [
+                    {
+                        "contents": 27,
+                        "tag": "GenericCompound"
+                    },
+                    1
+                ]
+            ]
+        }
+    ],
+    "predators": [
+        [
+            {
+                "fitnessImpact": 0.4901681711436634,
+                "irresistance": [
+                    {
+                        "contents": 27,
+                        "tag": "GenericCompound"
+                    }
+                ],
+                "numAttacks": 1
+            },
+            0.4031670022489978
+        ],
+        [
+            {
+                "fitnessImpact": 0.1531084617953737,
+                "irresistance": [
+                    {
+                        "contents": 26,
+                        "tag": "GenericCompound"
+                    },
+                    {
+                        "contents": 27,
+                        "tag": "GenericCompound"
+                    }
+                ],
+                "numAttacks": 1
+            },
+            0.73479241706388593
+        ],
+        [
+            {
+                "fitnessImpact": 0.2531084617953737,
+                "irresistance": [
+                    {
+                        "contents": 6,
+                        "tag": "GenericCompound"
+                    },
+                    {
+                        "contents": 7,
+                        "tag": "GenericCompound"
+                    }
+                ],
+                "numAttacks": 1
+            },
+            0.53479241706388593
+        ],
+        [
+            {
+                "fitnessImpact": 0.3531084617953737,
+                "irresistance": [
+                    {
+                        "contents": 12,
+                        "tag": "GenericCompound"
+                    },
+                    {
+                        "contents": 16,
+                        "tag": "GenericCompound"
+                    }
+                ],
+                "numAttacks": 1
+            },
+            0.63479241706388593
+        ]
+    ],
+    "settings": {
+        "automimicry": false,
+        "numPlants": 50,
+        "predatorsRandom": false
+    },
+    "soil": [
+        [
+            [],
+            10
+        ]
+    ],
+    "toxicCompounds": [
+        [
+            {
+                "contents": 6,
+                "tag": "GenericCompound"
+            },
+            0.588046101431176
+        ],
+        [
+            {
+                "contents": 7,
+                "tag": "GenericCompound"
+            },
+            0.788046101431176
+        ],
+        [
+            {
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+                "tag": "GenericCompound"
+            },
+            0.5910345760733821
+        ],
+        [
+            {
+                "contents": 15,
+                "tag": "GenericCompound"
+            },
+            1
+        ],
+        [
+            {
+                "contents": 16,
+                "tag": "GenericCompound"
+            },
+            1
+        ],
+        [
+            {
+                "contents": 25,
+                "tag": "GenericCompound"
+            },
+            0.788046101431176
+        ],
+        [
+            {
+                "contents": 26,
+                "tag": "GenericCompound"
+            },
+            0.788046101431176
+        ],
+        [
+            {
+                "contents": 27,
+                "tag": "GenericCompound"
+            },
+            1
+        ]
+    ]
+}