started vortrag & deps, added results of simulation

This commit is contained in:
Stefan Dresselhaus
2018-06-25 21:59:56 +02:00
parent c731a0f131
commit 6795c93f99
299 changed files with 137776 additions and 1 deletions

File diff suppressed because it is too large Load Diff

File diff suppressed because it is too large Load Diff

File diff suppressed because it is too large Load Diff

File diff suppressed because it is too large Load Diff

File diff suppressed because it is too large Load Diff

File diff suppressed because it is too large Load Diff

File diff suppressed because it is too large Load Diff

File diff suppressed because it is too large Load Diff

File diff suppressed because it is too large Load Diff

File diff suppressed because it is too large Load Diff

View File

@ -0,0 +1,564 @@
{
"maxCompound": 30,
"metabolismIteration": 100,
"possibleEnzymes": [
{
"dominance": null,
"enzymeName": "Substrate PPM -> GenericCompound 1",
"substrateRequirements": [],
"synthesis": [
[
{
"contents": [],
"tag": "Substrate"
},
-1
],
[
{
"contents": 1,
"tag": "GenericCompound"
},
1
]
]
},
{
"dominance": null,
"enzymeName": "Substrate PPM -> GenericCompound 8",
"substrateRequirements": [],
"synthesis": [
[
{
"contents": [],
"tag": "Substrate"
},
-1
],
[
{
"contents": 8,
"tag": "GenericCompound"
},
1
]
]
},
{
"dominance": null,
"enzymeName": "Substrate PPM -> GenericCompound 17",
"substrateRequirements": [],
"synthesis": [
[
{
"contents": [],
"tag": "Substrate"
},
-1
],
[
{
"contents": 17,
"tag": "GenericCompound"
},
1
]
]
},
{
"dominance": null,
"enzymeName": "GenericCompound 1 -> GenericCompound 2",
"substrateRequirements": [],
"synthesis": [
[
{
"contents": 1,
"tag": "GenericCompound"
},
-1
],
[
{
"contents": 2,
"tag": "GenericCompound"
},
1
]
]
},
{
"dominance": null,
"enzymeName": "GenericCompound 1 -> GenericCompound 3",
"substrateRequirements": [],
"synthesis": [
[
{
"contents": 1,
"tag": "GenericCompound"
},
-1
],
[
{
"contents": 3,
"tag": "GenericCompound"
},
1
]
]
},
{
"dominance": null,
"enzymeName": "GenericCompound 1 -> GenericCompound 6",
"substrateRequirements": [],
"synthesis": [
[
{
"contents": 1,
"tag": "GenericCompound"
},
-1
],
[
{
"contents": 6,
"tag": "GenericCompound"
},
1
]
]
},
{
"dominance": null,
"enzymeName": "GenericCompound 6 -> GenericCompound 7",
"substrateRequirements": [],
"synthesis": [
[
{
"contents": 6,
"tag": "GenericCompound"
},
-1
],
[
{
"contents": 7,
"tag": "GenericCompound"
},
1
]
]
},
{
"dominance": null,
"enzymeName": "GenericCompound 8 -> GenericCompound 9",
"substrateRequirements": [],
"synthesis": [
[
{
"contents": 8,
"tag": "GenericCompound"
},
-1
],
[
{
"contents": 9,
"tag": "GenericCompound"
},
1
]
]
},
{
"dominance": null,
"enzymeName": "GenericCompound 8 -> GenericCompound 10",
"substrateRequirements": [],
"synthesis": [
[
{
"contents": 8,
"tag": "GenericCompound"
},
-1
],
[
{
"contents": 10,
"tag": "GenericCompound"
},
1
]
]
},
{
"dominance": null,
"enzymeName": "GenericCompound 8 -> GenericCompound 12",
"substrateRequirements": [],
"synthesis": [
[
{
"contents": 8,
"tag": "GenericCompound"
},
-1
],
[
{
"contents": 12,
"tag": "GenericCompound"
},
1
]
]
},
{
"dominance": null,
"enzymeName": "GenericCompound 8 -> GenericCompound 15",
"substrateRequirements": [],
"synthesis": [
[
{
"contents": 8,
"tag": "GenericCompound"
},
-1
],
[
{
"contents": 15,
"tag": "GenericCompound"
},
1
]
]
},
{
"dominance": null,
"enzymeName": "GenericCompound 10 -> GenericCompound 11",
"substrateRequirements": [],
"synthesis": [
[
{
"contents": 10,
"tag": "GenericCompound"
},
-1
],
[
{
"contents": 11,
"tag": "GenericCompound"
},
1
]
]
},
{
"dominance": null,
"enzymeName": "GenericCompound 15 -> GenericCompound 16",
"substrateRequirements": [],
"synthesis": [
[
{
"contents": 15,
"tag": "GenericCompound"
},
-1
],
[
{
"contents": 16,
"tag": "GenericCompound"
},
1
]
]
},
{
"dominance": null,
"enzymeName": "GenericCompound 17 -> GenericCompound 18",
"substrateRequirements": [],
"synthesis": [
[
{
"contents": 17,
"tag": "GenericCompound"
},
-1
],
[
{
"contents": 18,
"tag": "GenericCompound"
},
1
]
]
},
{
"dominance": null,
"enzymeName": "GenericCompound 17 -> GenericCompound 19",
"substrateRequirements": [],
"synthesis": [
[
{
"contents": 17,
"tag": "GenericCompound"
},
-1
],
[
{
"contents": 19,
"tag": "GenericCompound"
},
1
]
]
},
{
"dominance": null,
"enzymeName": "GenericCompound 17 -> GenericCompound 25",
"substrateRequirements": [],
"synthesis": [
[
{
"contents": 17,
"tag": "GenericCompound"
},
-1
],
[
{
"contents": 25,
"tag": "GenericCompound"
},
1
]
]
},
{
"dominance": null,
"enzymeName": "GenericCompound 19 -> GenericCompound 20",
"substrateRequirements": [],
"synthesis": [
[
{
"contents": 19,
"tag": "GenericCompound"
},
-1
],
[
{
"contents": 20,
"tag": "GenericCompound"
},
1
]
]
},
{
"dominance": null,
"enzymeName": "GenericCompound 20 -> GenericCompound 21",
"substrateRequirements": [],
"synthesis": [
[
{
"contents": 20,
"tag": "GenericCompound"
},
-1
],
[
{
"contents": 21,
"tag": "GenericCompound"
},
1
]
]
},
{
"dominance": null,
"enzymeName": "GenericCompound 25 -> GenericCompound 26",
"substrateRequirements": [],
"synthesis": [
[
{
"contents": 25,
"tag": "GenericCompound"
},
-1
],
[
{
"contents": 26,
"tag": "GenericCompound"
},
1
]
]
},
{
"dominance": null,
"enzymeName": "GenericCompound 25 -> GenericCompound 27",
"substrateRequirements": [],
"synthesis": [
[
{
"contents": 25,
"tag": "GenericCompound"
},
-1
],
[
{
"contents": 27,
"tag": "GenericCompound"
},
1
]
]
}
],
"predators": [
[
{
"fitnessImpact": 0.4901681711436634,
"irresistance": [
{
"contents": 26,
"tag": "GenericCompound"
}
],
"numAttacks": 1
},
0.4031670022489978
],
[
{
"fitnessImpact": 0.1531084617953737,
"irresistance": [
{
"contents": 26,
"tag": "GenericCompound"
},
{
"contents": 27,
"tag": "GenericCompound"
}
],
"numAttacks": 1
},
0.73479241706388593
],
[
{
"fitnessImpact": 0.2531084617953737,
"irresistance": [
{
"contents": 6,
"tag": "GenericCompound"
},
{
"contents": 7,
"tag": "GenericCompound"
}
],
"numAttacks": 1
},
0.53479241706388593
],
[
{
"fitnessImpact": 0.3531084617953737,
"irresistance": [
{
"contents": 12,
"tag": "GenericCompound"
},
{
"contents": 16,
"tag": "GenericCompound"
}
],
"numAttacks": 1
},
0.63479241706388593
]
],
"settings": {
"automimicry": false,
"logEveryNIterations": 1,
"numPlants": 100,
"predatorBehaviour": {
"contents": 10,
"tag": "AttackRandom"
}
, "mutationRate": 0.01
, "deletionDuplicationRate": 0.05
, "geneAddRate": 0.005
, "activationNoiseIntensity": 0.01
, "staticEnzymeCost": 0.01
, "nutrientImpact": 0.2
},
"soil": [
[
[],
20
]
],
"toxicCompounds": [
[
{
"contents": 6,
"tag": "GenericCompound"
},
0.5
],
[
{
"contents": 7,
"tag": "GenericCompound"
},
1
],
[
{
"contents": 12,
"tag": "GenericCompound"
},
0.25
],
[
{
"contents": 15,
"tag": "GenericCompound"
},
0.5
],
[
{
"contents": 16,
"tag": "GenericCompound"
},
1
],
[
{
"contents": 26,
"tag": "GenericCompound"
},
0.5
],
[
{
"contents": 27,
"tag": "GenericCompound"
},
1
]
]
}