chemodiversity/documentation.html

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<!DOCTYPE html>
<html>
<head>
<meta charset="utf-8">
<meta name="generator" content="pandoc">
<meta name="author" content="Stefan Dresselhaus">
<title>Sketch for simulating chemodiversity</title>
<meta name="apple-mobile-web-app-capable" content="yes">
<meta name="apple-mobile-web-app-status-bar-style" content="black-translucent">
<meta name="viewport" content="width=device-width, initial-scale=1.0, maximum-scale=1.0, user-scalable=no, minimal-ui">
<style type="text/css">
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.reveal b, .reveal u, .reveal center,
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.reveal.concave .slides section.stack {
-webkit-transform-style: preserve-3d;
transform-style: preserve-3d; }
.reveal .slides > section[data-transition=concave].past,
.reveal .slides > section[data-transition~=concave-out].past,
.reveal.concave .slides > section:not([data-transition]).past {
-webkit-transform: translate3d(-100%, 0, 0) rotateY(90deg) translate3d(-100%, 0, 0);
transform: translate3d(-100%, 0, 0) rotateY(90deg) translate3d(-100%, 0, 0); }
.reveal .slides > section[data-transition=concave].future,
.reveal .slides > section[data-transition~=concave-in].future,
.reveal.concave .slides > section:not([data-transition]).future {
-webkit-transform: translate3d(100%, 0, 0) rotateY(-90deg) translate3d(100%, 0, 0);
transform: translate3d(100%, 0, 0) rotateY(-90deg) translate3d(100%, 0, 0); }
.reveal .slides > section > section[data-transition=concave].past,
.reveal .slides > section > section[data-transition~=concave-out].past,
.reveal.concave .slides > section > section:not([data-transition]).past {
-webkit-transform: translate3d(0, -80%, 0) rotateX(-70deg) translate3d(0, -80%, 0);
transform: translate3d(0, -80%, 0) rotateX(-70deg) translate3d(0, -80%, 0); }
.reveal .slides > section > section[data-transition=concave].future,
.reveal .slides > section > section[data-transition~=concave-in].future,
.reveal.concave .slides > section > section:not([data-transition]).future {
-webkit-transform: translate3d(0, 80%, 0) rotateX(70deg) translate3d(0, 80%, 0);
transform: translate3d(0, 80%, 0) rotateX(70deg) translate3d(0, 80%, 0); }
.reveal .slides section[data-transition=zoom],
.reveal.zoom .slides section:not([data-transition]) {
transition-timing-function: ease; }
.reveal .slides > section[data-transition=zoom].past,
.reveal .slides > section[data-transition~=zoom-out].past,
.reveal.zoom .slides > section:not([data-transition]).past {
visibility: hidden;
-webkit-transform: scale(16);
transform: scale(16); }
.reveal .slides > section[data-transition=zoom].future,
.reveal .slides > section[data-transition~=zoom-in].future,
.reveal.zoom .slides > section:not([data-transition]).future {
visibility: hidden;
-webkit-transform: scale(0.2);
transform: scale(0.2); }
.reveal .slides > section > section[data-transition=zoom].past,
.reveal .slides > section > section[data-transition~=zoom-out].past,
.reveal.zoom .slides > section > section:not([data-transition]).past {
-webkit-transform: translate(0, -150%);
transform: translate(0, -150%); }
.reveal .slides > section > section[data-transition=zoom].future,
.reveal .slides > section > section[data-transition~=zoom-in].future,
.reveal.zoom .slides > section > section:not([data-transition]).future {
-webkit-transform: translate(0, 150%);
transform: translate(0, 150%); }
.reveal.cube .slides {
-webkit-perspective: 1300px;
perspective: 1300px; }
.reveal.cube .slides section {
padding: 30px;
min-height: 700px;
-webkit-backface-visibility: hidden;
backface-visibility: hidden;
box-sizing: border-box;
-webkit-transform-style: preserve-3d;
transform-style: preserve-3d; }
.reveal.center.cube .slides section {
min-height: 0; }
.reveal.cube .slides section:not(.stack):before {
content: '';
position: absolute;
display: block;
width: 100%;
height: 100%;
left: 0;
top: 0;
background: rgba(0, 0, 0, 0.1);
border-radius: 4px;
-webkit-transform: translateZ(-20px);
transform: translateZ(-20px); }
.reveal.cube .slides section:not(.stack):after {
content: '';
position: absolute;
display: block;
width: 90%;
height: 30px;
left: 5%;
bottom: 0;
background: none;
z-index: 1;
border-radius: 4px;
box-shadow: 0px 95px 25px rgba(0, 0, 0, 0.2);
-webkit-transform: translateZ(-90px) rotateX(65deg);
transform: translateZ(-90px) rotateX(65deg); }
.reveal.cube .slides > section.stack {
padding: 0;
background: none; }
.reveal.cube .slides > section.past {
-webkit-transform-origin: 100% 0%;
transform-origin: 100% 0%;
-webkit-transform: translate3d(-100%, 0, 0) rotateY(-90deg);
transform: translate3d(-100%, 0, 0) rotateY(-90deg); }
.reveal.cube .slides > section.future {
-webkit-transform-origin: 0% 0%;
transform-origin: 0% 0%;
-webkit-transform: translate3d(100%, 0, 0) rotateY(90deg);
transform: translate3d(100%, 0, 0) rotateY(90deg); }
.reveal.cube .slides > section > section.past {
-webkit-transform-origin: 0% 100%;
transform-origin: 0% 100%;
-webkit-transform: translate3d(0, -100%, 0) rotateX(90deg);
transform: translate3d(0, -100%, 0) rotateX(90deg); }
.reveal.cube .slides > section > section.future {
-webkit-transform-origin: 0% 0%;
transform-origin: 0% 0%;
-webkit-transform: translate3d(0, 100%, 0) rotateX(-90deg);
transform: translate3d(0, 100%, 0) rotateX(-90deg); }
.reveal.page .slides {
-webkit-perspective-origin: 0% 50%;
perspective-origin: 0% 50%;
-webkit-perspective: 3000px;
perspective: 3000px; }
.reveal.page .slides section {
padding: 30px;
min-height: 700px;
box-sizing: border-box;
-webkit-transform-style: preserve-3d;
transform-style: preserve-3d; }
.reveal.page .slides section.past {
z-index: 12; }
.reveal.page .slides section:not(.stack):before {
content: '';
position: absolute;
display: block;
width: 100%;
height: 100%;
left: 0;
top: 0;
background: rgba(0, 0, 0, 0.1);
-webkit-transform: translateZ(-20px);
transform: translateZ(-20px); }
.reveal.page .slides section:not(.stack):after {
content: '';
position: absolute;
display: block;
width: 90%;
height: 30px;
left: 5%;
bottom: 0;
background: none;
z-index: 1;
border-radius: 4px;
box-shadow: 0px 95px 25px rgba(0, 0, 0, 0.2);
-webkit-transform: translateZ(-90px) rotateX(65deg); }
.reveal.page .slides > section.stack {
padding: 0;
background: none; }
.reveal.page .slides > section.past {
-webkit-transform-origin: 0% 0%;
transform-origin: 0% 0%;
-webkit-transform: translate3d(-40%, 0, 0) rotateY(-80deg);
transform: translate3d(-40%, 0, 0) rotateY(-80deg); }
.reveal.page .slides > section.future {
-webkit-transform-origin: 100% 0%;
transform-origin: 100% 0%;
-webkit-transform: translate3d(0, 0, 0);
transform: translate3d(0, 0, 0); }
.reveal.page .slides > section > section.past {
-webkit-transform-origin: 0% 0%;
transform-origin: 0% 0%;
-webkit-transform: translate3d(0, -40%, 0) rotateX(80deg);
transform: translate3d(0, -40%, 0) rotateX(80deg); }
.reveal.page .slides > section > section.future {
-webkit-transform-origin: 0% 100%;
transform-origin: 0% 100%;
-webkit-transform: translate3d(0, 0, 0);
transform: translate3d(0, 0, 0); }
.reveal .slides section[data-transition=fade],
.reveal.fade .slides section:not([data-transition]),
.reveal.fade .slides > section > section:not([data-transition]) {
-webkit-transform: none;
transform: none;
transition: opacity 0.5s; }
.reveal.fade.overview .slides section,
.reveal.fade.overview .slides > section > section {
transition: none; }
.reveal .slides section[data-transition=none],
.reveal.none .slides section:not([data-transition]) {
-webkit-transform: none;
transform: none;
transition: none; }
.reveal .pause-overlay {
position: absolute;
top: 0;
left: 0;
width: 100%;
height: 100%;
background: black;
visibility: hidden;
opacity: 0;
z-index: 100;
transition: all 1s ease; }
.reveal.paused .pause-overlay {
visibility: visible;
opacity: 1; }
.no-transforms {
overflow-y: auto; }
.no-transforms .reveal .slides {
position: relative;
width: 80%;
height: auto !important;
top: 0;
left: 50%;
margin: 0;
text-align: center; }
.no-transforms .reveal .controls,
.no-transforms .reveal .progress {
display: none !important; }
.no-transforms .reveal .slides section {
display: block !important;
opacity: 1 !important;
position: relative !important;
height: auto;
min-height: 0;
top: 0;
left: -50%;
margin: 70px 0;
-webkit-transform: none;
transform: none; }
.no-transforms .reveal .slides section section {
left: 0; }
.reveal .no-transition,
.reveal .no-transition * {
transition: none !important; }
.reveal .backgrounds {
position: absolute;
width: 100%;
height: 100%;
top: 0;
left: 0;
-webkit-perspective: 600px;
perspective: 600px; }
.reveal .slide-background {
display: none;
position: absolute;
width: 100%;
height: 100%;
opacity: 0;
visibility: hidden;
overflow: hidden;
background-color: transparent;
background-position: 50% 50%;
background-repeat: no-repeat;
background-size: cover;
transition: all 800ms cubic-bezier(0.26, 0.86, 0.44, 0.985); }
.reveal .slide-background.stack {
display: block; }
.reveal .slide-background.present {
opacity: 1;
visibility: visible;
z-index: 2; }
.print-pdf .reveal .slide-background {
opacity: 1 !important;
visibility: visible !important; }
.reveal .slide-background video {
position: absolute;
width: 100%;
height: 100%;
max-width: none;
max-height: none;
top: 0;
left: 0;
-o-object-fit: cover;
object-fit: cover; }
.reveal .slide-background[data-background-size="contain"] video {
-o-object-fit: contain;
object-fit: contain; }
.reveal[data-background-transition=none] > .backgrounds .slide-background,
.reveal > .backgrounds .slide-background[data-background-transition=none] {
transition: none; }
.reveal[data-background-transition=slide] > .backgrounds .slide-background,
.reveal > .backgrounds .slide-background[data-background-transition=slide] {
opacity: 1;
-webkit-backface-visibility: hidden;
backface-visibility: hidden; }
.reveal[data-background-transition=slide] > .backgrounds .slide-background.past,
.reveal > .backgrounds .slide-background.past[data-background-transition=slide] {
-webkit-transform: translate(-100%, 0);
transform: translate(-100%, 0); }
.reveal[data-background-transition=slide] > .backgrounds .slide-background.future,
.reveal > .backgrounds .slide-background.future[data-background-transition=slide] {
-webkit-transform: translate(100%, 0);
transform: translate(100%, 0); }
.reveal[data-background-transition=slide] > .backgrounds .slide-background > .slide-background.past,
.reveal > .backgrounds .slide-background > .slide-background.past[data-background-transition=slide] {
-webkit-transform: translate(0, -100%);
transform: translate(0, -100%); }
.reveal[data-background-transition=slide] > .backgrounds .slide-background > .slide-background.future,
.reveal > .backgrounds .slide-background > .slide-background.future[data-background-transition=slide] {
-webkit-transform: translate(0, 100%);
transform: translate(0, 100%); }
.reveal[data-background-transition=convex] > .backgrounds .slide-background.past,
.reveal > .backgrounds .slide-background.past[data-background-transition=convex] {
opacity: 0;
-webkit-transform: translate3d(-100%, 0, 0) rotateY(-90deg) translate3d(-100%, 0, 0);
transform: translate3d(-100%, 0, 0) rotateY(-90deg) translate3d(-100%, 0, 0); }
.reveal[data-background-transition=convex] > .backgrounds .slide-background.future,
.reveal > .backgrounds .slide-background.future[data-background-transition=convex] {
opacity: 0;
-webkit-transform: translate3d(100%, 0, 0) rotateY(90deg) translate3d(100%, 0, 0);
transform: translate3d(100%, 0, 0) rotateY(90deg) translate3d(100%, 0, 0); }
.reveal[data-background-transition=convex] > .backgrounds .slide-background > .slide-background.past,
.reveal > .backgrounds .slide-background > .slide-background.past[data-background-transition=convex] {
opacity: 0;
-webkit-transform: translate3d(0, -100%, 0) rotateX(90deg) translate3d(0, -100%, 0);
transform: translate3d(0, -100%, 0) rotateX(90deg) translate3d(0, -100%, 0); }
.reveal[data-background-transition=convex] > .backgrounds .slide-background > .slide-background.future,
.reveal > .backgrounds .slide-background > .slide-background.future[data-background-transition=convex] {
opacity: 0;
-webkit-transform: translate3d(0, 100%, 0) rotateX(-90deg) translate3d(0, 100%, 0);
transform: translate3d(0, 100%, 0) rotateX(-90deg) translate3d(0, 100%, 0); }
.reveal[data-background-transition=concave] > .backgrounds .slide-background.past,
.reveal > .backgrounds .slide-background.past[data-background-transition=concave] {
opacity: 0;
-webkit-transform: translate3d(-100%, 0, 0) rotateY(90deg) translate3d(-100%, 0, 0);
transform: translate3d(-100%, 0, 0) rotateY(90deg) translate3d(-100%, 0, 0); }
.reveal[data-background-transition=concave] > .backgrounds .slide-background.future,
.reveal > .backgrounds .slide-background.future[data-background-transition=concave] {
opacity: 0;
-webkit-transform: translate3d(100%, 0, 0) rotateY(-90deg) translate3d(100%, 0, 0);
transform: translate3d(100%, 0, 0) rotateY(-90deg) translate3d(100%, 0, 0); }
.reveal[data-background-transition=concave] > .backgrounds .slide-background > .slide-background.past,
.reveal > .backgrounds .slide-background > .slide-background.past[data-background-transition=concave] {
opacity: 0;
-webkit-transform: translate3d(0, -100%, 0) rotateX(-90deg) translate3d(0, -100%, 0);
transform: translate3d(0, -100%, 0) rotateX(-90deg) translate3d(0, -100%, 0); }
.reveal[data-background-transition=concave] > .backgrounds .slide-background > .slide-background.future,
.reveal > .backgrounds .slide-background > .slide-background.future[data-background-transition=concave] {
opacity: 0;
-webkit-transform: translate3d(0, 100%, 0) rotateX(90deg) translate3d(0, 100%, 0);
transform: translate3d(0, 100%, 0) rotateX(90deg) translate3d(0, 100%, 0); }
.reveal[data-background-transition=zoom] > .backgrounds .slide-background,
.reveal > .backgrounds .slide-background[data-background-transition=zoom] {
transition-timing-function: ease; }
.reveal[data-background-transition=zoom] > .backgrounds .slide-background.past,
.reveal > .backgrounds .slide-background.past[data-background-transition=zoom] {
opacity: 0;
visibility: hidden;
-webkit-transform: scale(16);
transform: scale(16); }
.reveal[data-background-transition=zoom] > .backgrounds .slide-background.future,
.reveal > .backgrounds .slide-background.future[data-background-transition=zoom] {
opacity: 0;
visibility: hidden;
-webkit-transform: scale(0.2);
transform: scale(0.2); }
.reveal[data-background-transition=zoom] > .backgrounds .slide-background > .slide-background.past,
.reveal > .backgrounds .slide-background > .slide-background.past[data-background-transition=zoom] {
opacity: 0;
visibility: hidden;
-webkit-transform: scale(16);
transform: scale(16); }
.reveal[data-background-transition=zoom] > .backgrounds .slide-background > .slide-background.future,
.reveal > .backgrounds .slide-background > .slide-background.future[data-background-transition=zoom] {
opacity: 0;
visibility: hidden;
-webkit-transform: scale(0.2);
transform: scale(0.2); }
.reveal[data-transition-speed="fast"] > .backgrounds .slide-background {
transition-duration: 400ms; }
.reveal[data-transition-speed="slow"] > .backgrounds .slide-background {
transition-duration: 1200ms; }
.reveal.overview {
-webkit-perspective-origin: 50% 50%;
perspective-origin: 50% 50%;
-webkit-perspective: 700px;
perspective: 700px; }
.reveal.overview .slides {
-moz-transform-style: preserve-3d; }
.reveal.overview .slides section {
height: 100%;
top: 0 !important;
opacity: 1 !important;
overflow: hidden;
visibility: visible !important;
cursor: pointer;
box-sizing: border-box; }
.reveal.overview .slides section:hover,
.reveal.overview .slides section.present {
outline: 10px solid rgba(150, 150, 150, 0.4);
outline-offset: 10px; }
.reveal.overview .slides section .fragment {
opacity: 1;
transition: none; }
.reveal.overview .slides section:after,
.reveal.overview .slides section:before {
display: none !important; }
.reveal.overview .slides > section.stack {
padding: 0;
top: 0 !important;
background: none;
outline: none;
overflow: visible; }
.reveal.overview .backgrounds {
-webkit-perspective: inherit;
perspective: inherit;
-moz-transform-style: preserve-3d; }
.reveal.overview .backgrounds .slide-background {
opacity: 1;
visibility: visible;
outline: 10px solid rgba(150, 150, 150, 0.1);
outline-offset: 10px; }
.reveal.overview .backgrounds .slide-background.stack {
overflow: visible; }
.reveal.overview .slides section,
.reveal.overview-deactivating .slides section {
transition: none; }
.reveal.overview .backgrounds .slide-background,
.reveal.overview-deactivating .backgrounds .slide-background {
transition: none; }
.reveal.rtl .slides,
.reveal.rtl .slides h1,
.reveal.rtl .slides h2,
.reveal.rtl .slides h3,
.reveal.rtl .slides h4,
.reveal.rtl .slides h5,
.reveal.rtl .slides h6 {
direction: rtl;
font-family: sans-serif; }
.reveal.rtl pre,
.reveal.rtl code {
direction: ltr; }
.reveal.rtl ol,
.reveal.rtl ul {
text-align: right; }
.reveal.rtl .progress span {
float: right; }
.reveal.has-parallax-background .backgrounds {
transition: all 0.8s ease; }
.reveal.has-parallax-background[data-transition-speed="fast"] .backgrounds {
transition-duration: 400ms; }
.reveal.has-parallax-background[data-transition-speed="slow"] .backgrounds {
transition-duration: 1200ms; }
.reveal .overlay {
position: absolute;
top: 0;
left: 0;
width: 100%;
height: 100%;
z-index: 1000;
background: rgba(0, 0, 0, 0.9);
opacity: 0;
visibility: hidden;
transition: all 0.3s ease; }
.reveal .overlay.visible {
opacity: 1;
visibility: visible; }
.reveal .overlay .spinner {
position: absolute;
display: block;
top: 50%;
left: 50%;
width: 32px;
height: 32px;
margin: -16px 0 0 -16px;
z-index: 10;
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transition: all 0.3s ease; }
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position: absolute;
left: 0;
top: 0;
width: 100%;
height: 40px;
z-index: 2;
border-bottom: 1px solid #222; }
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display: inline-block;
width: 40px;
height: 40px;
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padding: 0 10px;
float: right;
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box-sizing: border-box; }
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height: 20px;
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background-size: 100%;
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display: -webkit-box;
display: -ms-flexbox;
display: flex;
top: 40px;
right: 0;
bottom: 0;
left: 0; }
.reveal .overlay.overlay-preview .viewport iframe {
width: 100%;
height: 100%;
max-width: 100%;
max-height: 100%;
border: 0;
opacity: 0;
visibility: hidden;
transition: all 0.3s ease; }
.reveal .overlay.overlay-preview.loaded .viewport iframe {
opacity: 1;
visibility: visible; }
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position: absolute;
z-index: -1;
left: 0;
top: 45%;
width: 100%;
text-align: center;
letter-spacing: normal; }
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opacity: 0;
transition: opacity 0.3s ease 0.3s; }
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visibility: hidden;
-webkit-transform: scale(0.2);
transform: scale(0.2); }
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overflow: auto;
color: #fff; }
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width: 600px;
margin: auto;
padding: 20px 20px 80px 20px;
text-align: center;
letter-spacing: normal; }
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border: 1px solid #fff;
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padding-bottom: 20px; }
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position: absolute;
left: 15px;
bottom: 20px;
z-index: 30;
cursor: pointer;
transition: all 400ms ease;
-webkit-tap-highlight-color: transparent; }
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opacity: 0;
visibility: hidden; }
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display: inline-block;
line-height: 1.2;
overflow: hidden;
vertical-align: top;
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perspective: 400px;
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perspective-origin: 50% 50%; }
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text-shadow: none; }
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position: relative;
padding: 0 2px;
pointer-events: none;
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transform-origin: 50% 0%;
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transform-style: preserve-3d;
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-webkit-transform: translate3d(0px, 0px, -45px) rotateX(90deg);
transform: translate3d(0px, 0px, -45px) rotateX(90deg); }
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content: attr(data-title);
display: block;
position: absolute;
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transform-origin: 50% 0%;
-webkit-transform: translate3d(0px, 110%, 0px) rotateX(-90deg);
transform: translate3d(0px, 110%, 0px) rotateX(-90deg); }
.reveal aside.notes {
display: none; }
.reveal .speaker-notes {
display: none;
position: absolute;
width: 25vw;
height: 100%;
top: 0;
left: 100%;
padding: 14px 18px 14px 18px;
z-index: 1;
font-size: 18px;
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color: #222;
background-color: #f5f5f5;
overflow: auto;
box-sizing: border-box;
text-align: left;
font-family: Helvetica, sans-serif;
-webkit-overflow-scrolling: touch; }
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color: #ccc;
font-style: italic; }
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outline: none; }
.reveal .speaker-notes:before {
content: 'Speaker notes';
display: block;
margin-bottom: 10px;
opacity: 0.5; }
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max-width: 75vw;
overflow: visible; }
.reveal.show-notes .speaker-notes {
display: block; }
@media screen and (min-width: 1600px) {
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@media screen and (max-width: 1024px) {
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max-width: none;
max-height: 70%;
overflow: visible; }
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left: 0;
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@media screen and (max-width: 600px) {
.reveal.show-notes {
max-height: 60%; }
.reveal.show-notes .speaker-notes {
top: 100%;
height: 66.6666666667%; }
.reveal .speaker-notes {
font-size: 14px; } }
.zoomed .reveal *,
.zoomed .reveal *:before,
.zoomed .reveal *:after {
-webkit-backface-visibility: visible !important;
backface-visibility: visible !important; }
.zoomed .reveal .progress,
.zoomed .reveal .controls {
opacity: 0; }
.zoomed .reveal .roll span {
background: none; }
.zoomed .reveal .roll span:after {
visibility: hidden; }
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font-style: italic;
font-weight: 700;
src: local('Lato Bold Italic'), local('Lato-BoldItalic'), url(data:font/ttf;base64,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
}
@font-face {
font-family: 'Lato';
font-style: normal;
font-weight: 400;
src: local('Lato Regular'), local('Lato-Regular'), url(data:font/ttf;base64,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
}
@font-face {
font-family: 'Lato';
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<div class="reveal">
<div class="slides">
<section>
<h1 class="title">Sketch for simulating chemodiversity</h1>
<p class="author">Stefan Dresselhaus</p>
</section>
<section id="rough-sketch-components-responsible-for-chemodiversity" class="slide level1">
<h1>(rough) sketch components responsible for chemodiversity</h1>
</section>
<section class="slide level1">
<h2 id="genes">Genes</h2>
<ul>
<li class="fragment">define which enzymes are produced in which quantities
<ul>
<li class="fragment">list in fig. 1 in [<a href="git@github.com:hakimel/reveal.js.git">1</a>]</li>
</ul></li>
<li class="fragment">can be scaled down/inactivated (i.e. when predators leave for generations)
<ul>
<li class="fragment">easy to ramp up production as long as the genes are still there</li>
</ul></li>
<li class="fragment">plants can survive without problems with inactive PSM-cycles when no adversaries are present.</li>
</ul>
</section>
<section class="slide level1">
<h3 id="inheritance-mutation">Inheritance &amp; Mutation</h3>
<ul>
<li class="fragment">via whole-genome and local-genome duplication</li>
<li class="fragment">copies accumulate mutations that lead to neofunctionalization</li>
<li class="fragment">e.g. subtle differences in terpene synthases can yield vastly different products
<ul>
<li class="fragment">i.e. these changes can appear easily</li>
<li class="fragment">need to classify products by “chemical distance” for simulation</li>
<li class="fragment"><strong>TODO</strong>: Map/Markov-Chain of mutations that may occur here?</li>
</ul></li>
</ul>
</section>
<section class="slide level1">
<h3 id="evolutional-strategies">Evolutional strategies</h3>
<ul>
<li class="fragment">“Bet-hedging”: reduce variations of fitness over time
<ul>
<li class="fragment"><strong>TODO</strong>: understand</li>
<li class="fragment">different effects of intra-cohort-variation vs. inter-cohort-variation</li>
</ul></li>
<li class="fragment">Plants with inactive PSM can survive if predators are deterred by other individuals due to automimicry-effect which <em>could</em> foster wider genetic variance
<ul>
<li class="fragment">the more of those individuals are present in a population, the less their overall fitness becomes.</li>
<li class="fragment"><strong>TODO</strong>: fitness must also be able to depend on relative appearance of adversarial traits in the population
<ul>
<li class="fragment">Keyword: Frequency-dependent-selection (FDS)</li>
</ul></li>
</ul></li>
</ul>
</section>
<section class="slide level1">
<h2 id="pathways-to-produce-chemical-compounds">Pathways to produce chemical compounds</h2>
<ul>
<li class="fragment">40k+ compounds just stem from compounds of the calvin-cycle taking the MEP-pathway or from the krebs-cycle taking the MVA-pathway
<ul>
<li class="fragment">both yield the same intermediate product that forms the basis.</li>
</ul></li>
<li class="fragment">10k+ compounds are amino-acid-derivatives</li>
<li class="fragment">Chapter VI in [<a href="git@github.com:hakimel/reveal.js.git">1</a>] exemplary describes 4 complete different pathways that yield compounds.
<ul>
<li class="fragment">similar compounds/pathways should be found in the simulation</li>
</ul></li>
</ul>
</section>
<section class="slide level1">
<h3 id="consequences-of-producing-compounds">Consequences of producing compounds</h3>
<ul>
<li class="fragment">taking away parts of the calvin/krebs cycle puts pressure on those
<ul>
<li class="fragment"><strong>TODO</strong>: find out what they do and on what they depend.</li>
</ul></li>
<li class="fragment"><strong>TODO</strong>: where do amino-acids come from? How much impact has the diversion of these components?</li>
</ul>
</section>
<section class="slide level1">
<h2 id="maintaining-chemical-diversity">Maintaining chemical diversity</h2>
<h3 id="screening-hypothesis">+ screening hypothesis</h3>
<ul>
<li class="fragment">many PSM found have no <em>known</em> biological activity</li>
<li class="fragment">plants “keep them around” in case another mutation needs them to produce something “useful”</li>
<li class="fragment">creating things without use increase the need for photosynthesis and/or nutrient uptake.</li>
</ul>
<h3 id="screening-hypothesis-1">- screening hypothesis</h3>
<ul>
<li class="fragment">it is suggested that local abiotic &amp; biotic selection pressures are the main driver</li>
<li class="fragment">inactive molecules are not maintained long</li>
<li class="fragment">it was observed that some plants “rediscovered” some compounds in their evolution suggesting they got rid of them when no pressure to maintain them was applied</li>
</ul>
</section>
<section class="slide level1">
<h3 id="questions-resulting-from-this-that-should-be-answered-in-the-simulation">questions resulting from this that should be answered in the simulation</h3>
<ul>
<li class="fragment">details in chapter VIII of [<a href="git@github.com:hakimel/reveal.js.git">1</a>]</li>
<li class="fragment">how quick can lost diversity be restored?</li>
<li class="fragment">how expensive is it to keep producing many inactive substances while also producing active deterrents? Does this lead to a single point-of-failure due to overspecialisation? What must be done to prevent this?</li>
<li class="fragment">strong selection pressure <em>should</em> decrease quantity of compounds due to costs, but plants do not seem to care.
<ul>
<li class="fragment">is this diversity needed in presence of multiple different adversaries?</li>
<li class="fragment">does the simulation specialize when only presented with one adversary? What about adaptive adversaries?</li>
<li class="fragment">adaptation in the qualitative &amp; quantitative evolution in response to changed pressure? (i.e. those who cannot adapt quick enough die?)</li>
</ul></li>
</ul>
</section>
<section id="scenario" class="slide level1">
<h1>Scenario</h1>
<p>As this is literate Haskell first a bit of throat-clearing:</p>
<pre class="sourceCode literate haskell" id="cb1"><code class="sourceCode haskell"><div class="sourceLine" id="cb1-1" data-line-number="1"><span class="ot">{-# LANGUAGE RecordWildCards #-}</span></div>
<div class="sourceLine" id="cb1-2" data-line-number="2"></div>
<div class="sourceLine" id="cb1-3" data-line-number="3"><span class="kw">import</span> <span class="dt">Data.Functor</span> ((&lt;$&gt;))</div>
<div class="sourceLine" id="cb1-4" data-line-number="4"><span class="kw">import</span> <span class="dt">Control.Applicative</span> ((&lt;*&gt;))</div>
<div class="sourceLine" id="cb1-5" data-line-number="5"><span class="kw">import</span> <span class="dt">Control.Monad</span> (forM_)</div>
<div class="sourceLine" id="cb1-6" data-line-number="6"><span class="kw">import</span> <span class="dt">Data.List</span> (permutations, subsequences)</div></code></pre>
<p>Then some general aliases to make everything more readable:</p>
<pre class="sourceCode literate haskell" id="cb2"><code class="sourceCode haskell"><div class="sourceLine" id="cb2-1" data-line-number="1"><span class="kw">type</span> <span class="dt">Probability</span> <span class="fu">=</span> <span class="dt">Float</span></div>
<div class="sourceLine" id="cb2-2" data-line-number="2"><span class="kw">type</span> <span class="dt">Quantity</span> <span class="fu">=</span> <span class="dt">Int</span></div>
<div class="sourceLine" id="cb2-3" data-line-number="3"><span class="kw">type</span> <span class="dt">Activation</span> <span class="fu">=</span> <span class="dt">Float</span></div>
<div class="sourceLine" id="cb2-4" data-line-number="4"><span class="kw">type</span> <span class="dt">Amount</span> <span class="fu">=</span> <span class="dt">Float</span></div></code></pre>
</section>
<section class="slide level1">
<h2 id="nutrients-compounds">Nutrients &amp; Compounds</h2>
<p>Nutrients are the basis for any reaction and are found in the environment of the plant.</p>
<pre class="sourceCode literate haskell" id="cb3"><code class="sourceCode haskell"><div class="sourceLine" id="cb3-1" data-line-number="1"><span class="kw">data</span> <span class="dt">Nutrient</span> <span class="fu">=</span> <span class="dt">Sulfur</span></div>
<div class="sourceLine" id="cb3-2" data-line-number="2"> <span class="fu">|</span> <span class="dt">Phosphor</span></div>
<div class="sourceLine" id="cb3-3" data-line-number="3"> <span class="fu">|</span> <span class="dt">Nitrate</span></div>
<div class="sourceLine" id="cb3-4" data-line-number="4"> <span class="fu">|</span> <span class="dt">Photosynthesis</span></div>
<div class="sourceLine" id="cb3-5" data-line-number="5"> <span class="kw">deriving</span> (<span class="dt">Show</span>, <span class="dt">Enum</span>, <span class="dt">Bounded</span>, <span class="dt">Eq</span>)</div>
<div class="sourceLine" id="cb3-6" data-line-number="6"></div>
<div class="sourceLine" id="cb3-7" data-line-number="7"><span class="kw">data</span> <span class="dt">Component</span> <span class="fu">=</span> <span class="dt">PP</span></div>
<div class="sourceLine" id="cb3-8" data-line-number="8"> <span class="fu">|</span> <span class="dt">FPP</span></div>
<div class="sourceLine" id="cb3-9" data-line-number="9"> <span class="kw">deriving</span> (<span class="dt">Show</span>, <span class="dt">Enum</span>, <span class="dt">Bounded</span>, <span class="dt">Eq</span>)</div></code></pre>
<p>Compounds are either direct nutrients or already processed components</p>
<pre class="sourceCode literate haskell" id="cb4"><code class="sourceCode haskell"><div class="sourceLine" id="cb4-1" data-line-number="1"><span class="kw">data</span> <span class="dt">Compound</span> <span class="fu">=</span> <span class="dt">Substrate</span> <span class="dt">Nutrient</span></div>
<div class="sourceLine" id="cb4-2" data-line-number="2"> <span class="fu">|</span> <span class="dt">Produced</span> <span class="dt">Component</span></div>
<div class="sourceLine" id="cb4-3" data-line-number="3"> <span class="kw">deriving</span> (<span class="dt">Show</span>, <span class="dt">Eq</span>)</div></code></pre>
<p>This simple definition is only a brief sketch.</p>
</section>
<section class="slide level1">
<h2 id="enzymes">Enzymes</h2>
<p>Enzymes are the main reaction-driver behind synthesis of intricate compounds.</p>
<pre class="sourceCode literate haskell" id="cb5"><code class="sourceCode haskell"><div class="sourceLine" id="cb5-1" data-line-number="1"><span class="kw">data</span> <span class="dt">Enzyme</span> <span class="fu">=</span> <span class="dt">Enzyme</span></div>
<div class="sourceLine" id="cb5-2" data-line-number="2"> {<span class="ot"> enzymeName ::</span> <span class="dt">String</span></div>
<div class="sourceLine" id="cb5-3" data-line-number="3"> <span class="co">-- ^ Name of the Enzyme. Enzymes with the same name are supposed</span></div>
<div class="sourceLine" id="cb5-4" data-line-number="4"> <span class="co">-- to be identical.</span></div>
<div class="sourceLine" id="cb5-5" data-line-number="5"> ,<span class="ot"> substrateRequirements ::</span> [(<span class="dt">Nutrient</span>,<span class="dt">Amount</span>)]</div>
<div class="sourceLine" id="cb5-6" data-line-number="6"> <span class="co">-- ^ needed for reaction to take place</span></div>
<div class="sourceLine" id="cb5-7" data-line-number="7"> ,<span class="ot"> substrateIntolerance ::</span> [(<span class="dt">Nutrient</span>,<span class="dt">Amount</span>)]</div>
<div class="sourceLine" id="cb5-8" data-line-number="8"> <span class="co">-- ^ inhibits reaction if given nutrients are above the given concentration</span></div>
<div class="sourceLine" id="cb5-9" data-line-number="9"> ,<span class="ot"> synthesis ::</span> [(<span class="dt">Compound</span>,<span class="dt">Amount</span>)] <span class="ot">-&gt;</span> [(<span class="dt">Compound</span>,<span class="dt">Amount</span>)]</div>
<div class="sourceLine" id="cb5-10" data-line-number="10"> <span class="co">-- ^ given x in amount a, this will produce y in amount b</span></div>
<div class="sourceLine" id="cb5-11" data-line-number="11"> ,<span class="ot"> dominance ::</span> <span class="dt">Maybe</span> <span class="dt">Amount</span></div>
<div class="sourceLine" id="cb5-12" data-line-number="12"> <span class="co">-- ^ in case of competition for nutrients this denotes the priority</span></div>
<div class="sourceLine" id="cb5-13" data-line-number="13"> <span class="co">-- Nothing = max possible</span></div>
<div class="sourceLine" id="cb5-14" data-line-number="14"> }</div>
<div class="sourceLine" id="cb5-15" data-line-number="15"></div>
<div class="sourceLine" id="cb5-16" data-line-number="16"><span class="kw">instance</span> <span class="dt">Show</span> <span class="dt">Enzyme</span> <span class="kw">where</span></div>
<div class="sourceLine" id="cb5-17" data-line-number="17"> show (<span class="dt">Enzyme</span>{<span class="fu">..</span>}) <span class="fu">=</span> enzymeName</div>
<div class="sourceLine" id="cb5-18" data-line-number="18"></div>
<div class="sourceLine" id="cb5-19" data-line-number="19"><span class="kw">instance</span> <span class="dt">Eq</span> <span class="dt">Enzyme</span> <span class="kw">where</span></div>
<div class="sourceLine" id="cb5-20" data-line-number="20"> a <span class="fu">==</span> b <span class="fu">=</span> enzymeName a <span class="fu">==</span> enzymeName b</div></code></pre>
</section>
<section class="slide level1">
<p>Example “enzymes” could be:</p>
<pre class="sourceCode literate haskell" id="cb6"><code class="sourceCode haskell"><div class="sourceLine" id="cb6-1" data-line-number="1"><span class="ot">pps ::</span> <span class="dt">Enzyme</span> <span class="co">-- uses Phosphor from Substrate to produce PP</span></div>
<div class="sourceLine" id="cb6-2" data-line-number="2">pps <span class="fu">=</span> <span class="dt">Enzyme</span> <span class="st">&quot;PPS&quot;</span> [(<span class="dt">Phosphor</span>,<span class="dv">1</span>)] [] syn <span class="dt">Nothing</span></div>
<div class="sourceLine" id="cb6-3" data-line-number="3"> <span class="kw">where</span></div>
<div class="sourceLine" id="cb6-4" data-line-number="4"> syn compAvailable <span class="fu">=</span> [(<span class="dt">Substrate</span> <span class="dt">Phosphor</span>,i<span class="fu">*</span>(<span class="fu">-</span><span class="dv">1</span>)),(<span class="dt">Produced</span> <span class="dt">PP</span>,i)]</div>
<div class="sourceLine" id="cb6-5" data-line-number="5"> <span class="kw">where</span></div>
<div class="sourceLine" id="cb6-6" data-line-number="6"> i <span class="fu">=</span> getAmountOf (<span class="dt">Substrate</span> <span class="dt">Phosphor</span>) compAvailable</div>
<div class="sourceLine" id="cb6-7" data-line-number="7"></div>
<div class="sourceLine" id="cb6-8" data-line-number="8"><span class="ot">fpps ::</span> <span class="dt">Enzyme</span> <span class="co">-- PP -&gt; FPP</span></div>
<div class="sourceLine" id="cb6-9" data-line-number="9">fpps <span class="fu">=</span> <span class="dt">Enzyme</span> <span class="st">&quot;FPPS&quot;</span> [] [] syn <span class="dt">Nothing</span></div>
<div class="sourceLine" id="cb6-10" data-line-number="10"> <span class="kw">where</span></div>
<div class="sourceLine" id="cb6-11" data-line-number="11"> syn compAvailable <span class="fu">=</span> [(<span class="dt">Produced</span> <span class="dt">PP</span>,i<span class="fu">*</span>(<span class="fu">-</span><span class="dv">1</span>)),(<span class="dt">Produced</span> <span class="dt">FPP</span>,i<span class="fu">*</span><span class="fl">0.5</span>)]</div>
<div class="sourceLine" id="cb6-12" data-line-number="12"> <span class="kw">where</span></div>
<div class="sourceLine" id="cb6-13" data-line-number="13"> i <span class="fu">=</span> getAmountOf (<span class="dt">Produced</span> <span class="dt">PP</span>) compAvailable</div></code></pre>
</section>
<section class="slide level1">
<h2 id="environment">Environment</h2>
<p>In the environment we have predators that impact the fitness of our plants and may be resistant to some compounds the plant produces. They can also differ in their intensity.</p>
<pre class="sourceCode literate haskell" id="cb7"><code class="sourceCode haskell"><div class="sourceLine" id="cb7-1" data-line-number="1"><span class="kw">data</span> <span class="dt">Predator</span> <span class="fu">=</span> <span class="dt">Predator</span> {<span class="ot"> resistance ::</span> [<span class="dt">Component</span>]</div>
<div class="sourceLine" id="cb7-2" data-line-number="2"> <span class="co">-- ^ list of components this predator is resistant to</span></div>
<div class="sourceLine" id="cb7-3" data-line-number="3"> ,<span class="ot"> fitnessImpact ::</span> <span class="dt">Amount</span></div>
<div class="sourceLine" id="cb7-4" data-line-number="4"> <span class="co">-- ^ impact on the fitness of a plant</span></div>
<div class="sourceLine" id="cb7-5" data-line-number="5"> <span class="co">-- (~ agressiveness of the herbivore)</span></div>
<div class="sourceLine" id="cb7-6" data-line-number="6"> } <span class="kw">deriving</span> (<span class="dt">Show</span>, <span class="dt">Eq</span>)</div></code></pre>
<p>Exemplatory:</p>
<pre class="sourceCode literate haskell" id="cb8"><code class="sourceCode haskell"><div class="sourceLine" id="cb8-1" data-line-number="1"><span class="ot">greenfly ::</span> <span class="dt">Predator</span> <span class="co">-- 20% of plants die to greenfly, but the fly is</span></div>
<div class="sourceLine" id="cb8-2" data-line-number="2">greenfly <span class="fu">=</span> <span class="dt">Predator</span> [<span class="dt">PP</span>] <span class="fl">0.2</span> <span class="co">-- killed by any Component not being PP</span></div></code></pre>
</section>
<section class="slide level1">
<p>The environment itself is just the soil and the predators. Extensions would be possible.</p>
<pre class="sourceCode literate haskell" id="cb9"><code class="sourceCode haskell"><div class="sourceLine" id="cb9-1" data-line-number="1"><span class="kw">data</span> <span class="dt">Environment</span> <span class="fu">=</span></div>
<div class="sourceLine" id="cb9-2" data-line-number="2"> <span class="dt">Environment</span></div>
<div class="sourceLine" id="cb9-3" data-line-number="3"> {<span class="ot"> soil ::</span> [(<span class="dt">Nutrient</span>, <span class="dt">Amount</span>)]</div>
<div class="sourceLine" id="cb9-4" data-line-number="4"> <span class="co">-- ^ soil is a list of nutrients available to the plant.</span></div>
<div class="sourceLine" id="cb9-5" data-line-number="5"> ,<span class="ot"> predators ::</span> [(<span class="dt">Predator</span>, <span class="dt">Probability</span>)]</div>
<div class="sourceLine" id="cb9-6" data-line-number="6"> <span class="co">-- ^ Predators with the probability of appearance in this generation.</span></div>
<div class="sourceLine" id="cb9-7" data-line-number="7"> } <span class="kw">deriving</span> (<span class="dt">Show</span>, <span class="dt">Eq</span>)</div></code></pre>
<p>Example:</p>
<pre class="sourceCode literate haskell" id="cb10"><code class="sourceCode haskell"><div class="sourceLine" id="cb10-1" data-line-number="1"><span class="ot">exampleEnvironment ::</span> <span class="dt">Environment</span></div>
<div class="sourceLine" id="cb10-2" data-line-number="2">exampleEnvironment <span class="fu">=</span></div>
<div class="sourceLine" id="cb10-3" data-line-number="3"> <span class="dt">Environment</span></div>
<div class="sourceLine" id="cb10-4" data-line-number="4"> { soil <span class="fu">=</span> [ (<span class="dt">Nitrate</span>, <span class="dv">2</span>)</div>
<div class="sourceLine" id="cb10-5" data-line-number="5"> , (<span class="dt">Phosphor</span>, <span class="dv">3</span>)</div>
<div class="sourceLine" id="cb10-6" data-line-number="6"> , (<span class="dt">Photosynthesis</span>, <span class="dv">10</span>)</div>
<div class="sourceLine" id="cb10-7" data-line-number="7"> ]</div>
<div class="sourceLine" id="cb10-8" data-line-number="8"> , predators <span class="fu">=</span> [ (greenfly, <span class="fl">0.1</span>) ]</div>
<div class="sourceLine" id="cb10-9" data-line-number="9"> }</div></code></pre>
</section>
<section class="slide level1">
<h2 id="plants">Plants</h2>
<p>Plants consist of a Genome responsible for creation of the PSM and also an internal state how many nutrients and compounds are currently inside the plant.</p>
<pre class="sourceCode literate haskell" id="cb11"><code class="sourceCode haskell"><div class="sourceLine" id="cb11-1" data-line-number="1"><span class="kw">type</span> <span class="dt">Genome</span> <span class="fu">=</span> [(<span class="dt">Enzyme</span>, <span class="dt">Quantity</span>, <span class="dt">Activation</span>)]</div>
<div class="sourceLine" id="cb11-2" data-line-number="2"></div>
<div class="sourceLine" id="cb11-3" data-line-number="3"><span class="kw">data</span> <span class="dt">Plant</span> <span class="fu">=</span> <span class="dt">Plant</span></div>
<div class="sourceLine" id="cb11-4" data-line-number="4"> {<span class="ot"> genome ::</span> <span class="dt">Genome</span></div>
<div class="sourceLine" id="cb11-5" data-line-number="5"> <span class="co">-- ^ the genetic characteristic of the plant</span></div>
<div class="sourceLine" id="cb11-6" data-line-number="6"> ,<span class="ot"> absorbNutrients ::</span> <span class="dt">Environment</span> <span class="ot">-&gt;</span> [(<span class="dt">Nutrient</span>,<span class="dt">Amount</span>)]</div>
<div class="sourceLine" id="cb11-7" data-line-number="7"> <span class="co">-- ^ the capability to absorb nutrients given an environment</span></div>
<div class="sourceLine" id="cb11-8" data-line-number="8"> }</div>
<div class="sourceLine" id="cb11-9" data-line-number="9"><span class="kw">instance</span> <span class="dt">Show</span> <span class="dt">Plant</span> <span class="kw">where</span></div>
<div class="sourceLine" id="cb11-10" data-line-number="10"> show p <span class="fu">=</span> <span class="st">&quot;Plant with Genome &quot;</span> <span class="fu">++</span> show (genome p)</div>
<div class="sourceLine" id="cb11-11" data-line-number="11"><span class="kw">instance</span> <span class="dt">Eq</span> <span class="dt">Plant</span> <span class="kw">where</span></div>
<div class="sourceLine" id="cb11-12" data-line-number="12"> a <span class="fu">==</span> b <span class="fu">=</span> genome a <span class="fu">==</span> genome b</div></code></pre>
</section>
<section class="slide level1">
<p>The following example yields in the example-environment this population:</p>
<pre><code>*Main&gt; printPopulation [pps, fpps] plants
Population:
PPS ______oöö+++______oöö+++____________oöö+++oöö+++
FPPS ____________oöö+++oöö+++______oöö+++______oöö+++</code></pre>
<pre class="sourceCode literate haskell" id="cb13"><code class="sourceCode haskell"><div class="sourceLine" id="cb13-1" data-line-number="1"><span class="ot">plants ::</span> [<span class="dt">Plant</span>]</div>
<div class="sourceLine" id="cb13-2" data-line-number="2">plants <span class="fu">=</span> (\g <span class="ot">-&gt;</span> <span class="dt">Plant</span> g defaultAbsorption) <span class="fu">&lt;$&gt;</span> genomes</div>
<div class="sourceLine" id="cb13-3" data-line-number="3"> <span class="kw">where</span></div>
<div class="sourceLine" id="cb13-4" data-line-number="4"> enzymes <span class="fu">=</span> [pps, fpps]</div>
<div class="sourceLine" id="cb13-5" data-line-number="5"> quantity <span class="fu">=</span> [<span class="dv">1</span>,<span class="dv">2</span>]<span class="ot"> ::</span> [<span class="dt">Quantity</span>]</div>
<div class="sourceLine" id="cb13-6" data-line-number="6"> activation <span class="fu">=</span> [<span class="fl">0.7</span>, <span class="fl">0.9</span>, <span class="dv">1</span>]</div>
<div class="sourceLine" id="cb13-7" data-line-number="7"></div>
<div class="sourceLine" id="cb13-8" data-line-number="8"> genomes <span class="fu">=</span> <span class="kw">do</span></div>
<div class="sourceLine" id="cb13-9" data-line-number="9"> e <span class="ot">&lt;-</span> permutations enzymes</div>
<div class="sourceLine" id="cb13-10" data-line-number="10"> e' <span class="ot">&lt;-</span> subsequences e</div>
<div class="sourceLine" id="cb13-11" data-line-number="11"> q <span class="ot">&lt;-</span> quantity</div>
<div class="sourceLine" id="cb13-12" data-line-number="12"> a <span class="ot">&lt;-</span> activation</div>
<div class="sourceLine" id="cb13-13" data-line-number="13"> return <span class="fu">$</span> (,,) <span class="fu">&lt;$&gt;</span> e' <span class="fu">&lt;*&gt;</span> [q] <span class="fu">&lt;*&gt;</span> [a]</div>
<div class="sourceLine" id="cb13-14" data-line-number="14"></div>
<div class="sourceLine" id="cb13-15" data-line-number="15"> defaultAbsorption (<span class="dt">Environment</span> s _) <span class="fu">=</span> limit <span class="dt">Phosphor</span> <span class="dv">2</span></div>
<div class="sourceLine" id="cb13-16" data-line-number="16"> <span class="fu">.</span> limit <span class="dt">Nitrate</span> <span class="dv">1</span></div>
<div class="sourceLine" id="cb13-17" data-line-number="17"> <span class="fu">.</span> limit <span class="dt">Sulfur</span> <span class="dv">0</span></div>
<div class="sourceLine" id="cb13-18" data-line-number="18"> <span class="fu">&lt;$&gt;</span> s</div>
<div class="sourceLine" id="cb13-19" data-line-number="19"> <span class="co">-- custom absorbtion with helper-function:</span></div>
<div class="sourceLine" id="cb13-20" data-line-number="20"><span class="ot"> limit ::</span> <span class="dt">Nutrient</span> <span class="ot">-&gt;</span> <span class="dt">Amount</span> <span class="ot">-&gt;</span> (<span class="dt">Nutrient</span>, <span class="dt">Amount</span>) <span class="ot">-&gt;</span> (<span class="dt">Nutrient</span>, <span class="dt">Amount</span>)</div>
<div class="sourceLine" id="cb13-21" data-line-number="21"> limit n a (n', a')</div>
<div class="sourceLine" id="cb13-22" data-line-number="22"> <span class="fu">|</span> n <span class="fu">==</span> n' <span class="fu">=</span> (n, min a a') <span class="co">-- if we should limit, then we do ;)</span></div>
<div class="sourceLine" id="cb13-23" data-line-number="23"> <span class="fu">|</span> otherwise <span class="fu">=</span> (n', a')</div></code></pre>
</section>
<section class="slide level1">
<h2 id="fitness">Fitness</h2>
<p>The fitness-measure is central for the generation of offspring and the simulation. It evaluates the probability for passing on genes given a plant in an environment.</p>
<pre class="sourceCode literate haskell" id="cb14"><code class="sourceCode haskell"><div class="sourceLine" id="cb14-1" data-line-number="1"><span class="kw">type</span> <span class="dt">Fitness</span> <span class="fu">=</span> <span class="dt">Float</span></div>
<div class="sourceLine" id="cb14-2" data-line-number="2"></div>
<div class="sourceLine" id="cb14-3" data-line-number="3"><span class="ot">fitness ::</span> <span class="dt">Environment</span> <span class="ot">-&gt;</span> <span class="dt">Plant</span> <span class="ot">-&gt;</span> <span class="dt">Fitness</span></div>
<div class="sourceLine" id="cb14-4" data-line-number="4">fitness e p <span class="fu">=</span> survivalRate</div>
<div class="sourceLine" id="cb14-5" data-line-number="5"> <span class="kw">where</span></div>
<div class="sourceLine" id="cb14-6" data-line-number="6"> nutrients <span class="fu">=</span> absorbNutrients p e</div>
<div class="sourceLine" id="cb14-7" data-line-number="7"> products <span class="fu">=</span> produceCompounds p nutrients</div>
<div class="sourceLine" id="cb14-8" data-line-number="8"> survivalRate <span class="fu">=</span> deterPredators (predators e) products</div></code></pre>
</section>
<section class="slide level1">
<pre class="sourceCode literate haskell" id="cb15"><code class="sourceCode haskell"><div class="sourceLine" id="cb15-1" data-line-number="1"><span class="ot">produceCompounds ::</span> <span class="dt">Plant</span> <span class="ot">-&gt;</span> [(<span class="dt">Nutrient</span>, <span class="dt">Amount</span>)] <span class="ot">-&gt;</span> [<span class="dt">Compound</span>]</div>
<div class="sourceLine" id="cb15-2" data-line-number="2">produceCompounds (<span class="dt">Plant</span> genes _) <span class="fu">=</span> undefined</div>
<div class="sourceLine" id="cb15-3" data-line-number="3"> <span class="co">-- this will take some constrained linear algebra-solving</span></div></code></pre>
<pre class="sourceCode literate haskell" id="cb16"><code class="sourceCode haskell"><div class="sourceLine" id="cb16-1" data-line-number="1"><span class="ot">deterPredators ::</span> [(<span class="dt">Predator</span>, <span class="dt">Probability</span>)] <span class="ot">-&gt;</span> [<span class="dt">Compound</span>] <span class="ot">-&gt;</span> <span class="dt">Probability</span></div>
<div class="sourceLine" id="cb16-2" data-line-number="2">deterPredators ps cs <span class="fu">=</span> sum <span class="fu">$</span> <span class="kw">do</span></div>
<div class="sourceLine" id="cb16-3" data-line-number="3"> c <span class="ot">&lt;-</span> cs <span class="co">-- for every compound</span></div>
<div class="sourceLine" id="cb16-4" data-line-number="4"> (p,prob) <span class="ot">&lt;-</span> ps <span class="co">-- and every predator</span></div>
<div class="sourceLine" id="cb16-5" data-line-number="5"> return (<span class="kw">if</span> c <span class="ot">`notin`</span> (resistance p) <span class="co">-- if the plant cannot deter the predator</span></div>
<div class="sourceLine" id="cb16-6" data-line-number="6"> <span class="kw">then</span> prob <span class="fu">*</span> fitnessImpact p <span class="co">-- impact it weighted by probability</span></div>
<div class="sourceLine" id="cb16-7" data-line-number="7"> <span class="kw">else</span> <span class="dv">0</span>)</div>
<div class="sourceLine" id="cb16-8" data-line-number="8"> <span class="kw">where</span></div>
<div class="sourceLine" id="cb16-9" data-line-number="9"> (<span class="dt">Produced</span> a) <span class="ot">`notin`</span> b <span class="fu">=</span> all (<span class="fu">/=</span>a) b</div>
<div class="sourceLine" id="cb16-10" data-line-number="10"> _ <span class="ot">`notin`</span>_ <span class="fu">=</span> <span class="dt">False</span></div></code></pre>
<h2 id="mating-creation-of-diversity">Mating &amp; Creation of diversity</h2>
<p>TODO</p>
</section>
<section class="slide level1">
<h2 id="running-the-simulation">Running the simulation</h2>
<pre class="sourceCode literate haskell" id="cb17"><code class="sourceCode haskell"><div class="sourceLine" id="cb17-1" data-line-number="1">main <span class="fu">=</span> <span class="kw">do</span></div>
<div class="sourceLine" id="cb17-2" data-line-number="2"> putStrLn <span class="st">&quot;Environment:&quot;</span></div>
<div class="sourceLine" id="cb17-3" data-line-number="3"> print exampleEnvironment</div>
<div class="sourceLine" id="cb17-4" data-line-number="4"> putStrLn <span class="st">&quot;Example population:&quot;</span></div>
<div class="sourceLine" id="cb17-5" data-line-number="5"> printPopulation [pps, fpps] plants</div></code></pre>
<pre><code>runhaskell sketch.md.lhs
Environment:
Environment { soil = [(Nitrate,2.0),(Phosphor,3.0),(Photosynthesis,10.0)]
, predators = [(Predator {resistance = [PP], fitnessImpact = 0.2},0.1)]}
Example population:
Population:
PPS ______oöö+++______oöö+++____________oöö+++oöö+++
FPPS ____________oöö+++oöö+++______oöö+++______oöö+++</code></pre>
</section>
<section class="slide level1">
<h2 id="utility-functions">Utility Functions</h2>
<pre class="sourceCode literate haskell" id="cb19"><code class="sourceCode haskell"><div class="sourceLine" id="cb19-1" data-line-number="1"><span class="ot">getAmountOf ::</span> <span class="dt">Compound</span> <span class="ot">-&gt;</span> [(<span class="dt">Compound</span>, <span class="dt">Amount</span>)] <span class="ot">-&gt;</span> <span class="dt">Amount</span></div>
<div class="sourceLine" id="cb19-2" data-line-number="2">getAmountOf c <span class="fu">=</span> sum <span class="fu">.</span> fmap snd <span class="fu">.</span> filter ((<span class="fu">==</span> c) <span class="fu">.</span> fst)</div>
<div class="sourceLine" id="cb19-3" data-line-number="3"></div>
<div class="sourceLine" id="cb19-4" data-line-number="4"><span class="ot">printPopulation ::</span> [<span class="dt">Enzyme</span>] <span class="ot">-&gt;</span> [<span class="dt">Plant</span>] <span class="ot">-&gt;</span> <span class="dt">IO</span> ()</div>
<div class="sourceLine" id="cb19-5" data-line-number="5">printPopulation es ps <span class="fu">=</span> <span class="kw">do</span></div>
<div class="sourceLine" id="cb19-6" data-line-number="6"> <span class="kw">let</span> padded i str <span class="fu">=</span> take i <span class="fu">$</span> str <span class="fu">++</span> repeat <span class="ch">' '</span></div>
<div class="sourceLine" id="cb19-7" data-line-number="7"> putStrLn <span class="st">&quot;Population:&quot;</span></div>
<div class="sourceLine" id="cb19-8" data-line-number="8"> forM_ es <span class="fu">$</span> \e <span class="ot">-&gt;</span> <span class="kw">do</span></div>
<div class="sourceLine" id="cb19-9" data-line-number="9"> putStr <span class="fu">$</span> padded <span class="dv">8</span> (show e)</div>
<div class="sourceLine" id="cb19-10" data-line-number="10"> forM_ ps <span class="fu">$</span> \(<span class="dt">Plant</span> g _) <span class="ot">-&gt;</span> <span class="kw">do</span></div>
<div class="sourceLine" id="cb19-11" data-line-number="11"> <span class="kw">let</span> curE <span class="fu">=</span> sum <span class="fu">$</span> map (\(_,q,a) <span class="ot">-&gt;</span> (fromIntegral q)<span class="fu">*</span>a) </div>
<div class="sourceLine" id="cb19-12" data-line-number="12"> <span class="fu">.</span> filter (\(e',_,_) <span class="ot">-&gt;</span> e <span class="fu">==</span> e')</div>
<div class="sourceLine" id="cb19-13" data-line-number="13"> <span class="fu">$</span> g</div>
<div class="sourceLine" id="cb19-14" data-line-number="14"> plot x</div>
<div class="sourceLine" id="cb19-15" data-line-number="15"> <span class="fu">|</span> x <span class="fu">&gt;</span> <span class="dv">2</span> <span class="fu">=</span> <span class="st">&quot;O&quot;</span></div>
<div class="sourceLine" id="cb19-16" data-line-number="16"> <span class="fu">|</span> x <span class="fu">&gt;</span> <span class="dv">1</span> <span class="fu">=</span> <span class="st">&quot;+&quot;</span></div>
<div class="sourceLine" id="cb19-17" data-line-number="17"> <span class="fu">|</span> x <span class="fu">&gt;</span> <span class="fl">0.7</span> <span class="fu">=</span> <span class="st">&quot;ö&quot;</span></div>
<div class="sourceLine" id="cb19-18" data-line-number="18"> <span class="fu">|</span> x <span class="fu">&gt;</span> <span class="fl">0.5</span> <span class="fu">=</span> <span class="st">&quot;o&quot;</span></div>
<div class="sourceLine" id="cb19-19" data-line-number="19"> <span class="fu">|</span> x <span class="fu">&gt;</span> <span class="dv">0</span> <span class="fu">=</span> <span class="st">&quot;.&quot;</span></div>
<div class="sourceLine" id="cb19-20" data-line-number="20"> <span class="fu">|</span> otherwise <span class="fu">=</span> <span class="st">&quot;_&quot;</span></div>
<div class="sourceLine" id="cb19-21" data-line-number="21"> putStr (plot curE)</div>
<div class="sourceLine" id="cb19-22" data-line-number="22"> putStrLn <span class="st">&quot;&quot;</span></div></code></pre>
</section>
</div>
</div>
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// Parallax background image
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// Do not accept new dependencies via query config to avoid
// the potential of malicious script injection
if( typeof query['dependencies'] !== 'undefined' ) delete query['dependencies'];
// Copy options over to our config object
extend( config, options );
extend( config, query );
// Hide the address bar in mobile browsers
hideAddressBar();
// Loads the dependencies and continues to #start() once done
load();
}
/**
* Inspect the client to see what it's capable of, this
* should only happens once per runtime.
*/
function checkCapabilities() {
isMobileDevice = /(iphone|ipod|ipad|android)/gi.test( UA );
isChrome = /chrome/i.test( UA ) && !/edge/i.test( UA );
var testElement = document.createElement( 'div' );
features.transforms3d = 'WebkitPerspective' in testElement.style ||
'MozPerspective' in testElement.style ||
'msPerspective' in testElement.style ||
'OPerspective' in testElement.style ||
'perspective' in testElement.style;
features.transforms2d = 'WebkitTransform' in testElement.style ||
'MozTransform' in testElement.style ||
'msTransform' in testElement.style ||
'OTransform' in testElement.style ||
'transform' in testElement.style;
features.requestAnimationFrameMethod = window.requestAnimationFrame || window.webkitRequestAnimationFrame || window.mozRequestAnimationFrame;
features.requestAnimationFrame = typeof features.requestAnimationFrameMethod === 'function';
features.canvas = !!document.createElement( 'canvas' ).getContext;
// Transitions in the overview are disabled in desktop and
// Safari due to lag
features.overviewTransitions = !/Version\/[\d\.]+.*Safari/.test( UA );
// Flags if we should use zoom instead of transform to scale
// up slides. Zoom produces crisper results but has a lot of
// xbrowser quirks so we only use it in whitelsited browsers.
features.zoom = 'zoom' in testElement.style && !isMobileDevice &&
( isChrome || /Version\/[\d\.]+.*Safari/.test( UA ) );
}
/**
* Loads the dependencies of reveal.js. Dependencies are
* defined via the configuration option 'dependencies'
* and will be loaded prior to starting/binding reveal.js.
* Some dependencies may have an 'async' flag, if so they
* will load after reveal.js has been started up.
*/
function load() {
var scripts = [],
scriptsAsync = [],
scriptsToPreload = 0;
// Called once synchronous scripts finish loading
function proceed() {
if( scriptsAsync.length ) {
// Load asynchronous scripts
head.js.apply( null, scriptsAsync );
}
start();
}
function loadScript( s ) {
head.ready( s.src.match( /([\w\d_\-]*)\.?js$|[^\\\/]*$/i )[0], function() {
// Extension may contain callback functions
if( typeof s.callback === 'function' ) {
s.callback.apply( this );
}
if( --scriptsToPreload === 0 ) {
proceed();
}
});
}
for( var i = 0, len = config.dependencies.length; i < len; i++ ) {
var s = config.dependencies[i];
// Load if there's no condition or the condition is truthy
if( !s.condition || s.condition() ) {
if( s.async ) {
scriptsAsync.push( s.src );
}
else {
scripts.push( s.src );
}
loadScript( s );
}
}
if( scripts.length ) {
scriptsToPreload = scripts.length;
// Load synchronous scripts
head.js.apply( null, scripts );
}
else {
proceed();
}
}
/**
* Starts up reveal.js by binding input events and navigating
* to the current URL deeplink if there is one.
*/
function start() {
loaded = true;
// Make sure we've got all the DOM elements we need
setupDOM();
// Listen to messages posted to this window
setupPostMessage();
// Prevent the slides from being scrolled out of view
setupScrollPrevention();
// Resets all vertical slides so that only the first is visible
resetVerticalSlides();
// Updates the presentation to match the current configuration values
configure();
// Read the initial hash
readURL();
// Update all backgrounds
updateBackground( true );
// Notify listeners that the presentation is ready but use a 1ms
// timeout to ensure it's not fired synchronously after #initialize()
setTimeout( function() {
// Enable transitions now that we're loaded
dom.slides.classList.remove( 'no-transition' );
dom.wrapper.classList.add( 'ready' );
dispatchEvent( 'ready', {
'indexh': indexh,
'indexv': indexv,
'currentSlide': currentSlide
} );
}, 1 );
// Special setup and config is required when printing to PDF
if( isPrintingPDF() ) {
removeEventListeners();
// The document needs to have loaded for the PDF layout
// measurements to be accurate
if( document.readyState === 'complete' ) {
setupPDF();
}
else {
window.addEventListener( 'load', setupPDF );
}
}
}
/**
* Finds and stores references to DOM elements which are
* required by the presentation. If a required element is
* not found, it is created.
*/
function setupDOM() {
// Prevent transitions while we're loading
dom.slides.classList.add( 'no-transition' );
if( isMobileDevice ) {
dom.wrapper.classList.add( 'no-hover' );
}
else {
dom.wrapper.classList.remove( 'no-hover' );
}
if( /iphone/gi.test( UA ) ) {
dom.wrapper.classList.add( 'ua-iphone' );
}
else {
dom.wrapper.classList.remove( 'ua-iphone' );
}
// Background element
dom.background = createSingletonNode( dom.wrapper, 'div', 'backgrounds', null );
// Progress bar
dom.progress = createSingletonNode( dom.wrapper, 'div', 'progress', '<span></span>' );
dom.progressbar = dom.progress.querySelector( 'span' );
// Arrow controls
dom.controls = createSingletonNode( dom.wrapper, 'aside', 'controls',
'<button class="navigate-left" aria-label="previous slide"><div class="controls-arrow"></div></button>' +
'<button class="navigate-right" aria-label="next slide"><div class="controls-arrow"></div></button>' +
'<button class="navigate-up" aria-label="above slide"><div class="controls-arrow"></div></button>' +
'<button class="navigate-down" aria-label="below slide"><div class="controls-arrow"></div></button>' );
// Slide number
dom.slideNumber = createSingletonNode( dom.wrapper, 'div', 'slide-number', '' );
// Element containing notes that are visible to the audience
dom.speakerNotes = createSingletonNode( dom.wrapper, 'div', 'speaker-notes', null );
dom.speakerNotes.setAttribute( 'data-prevent-swipe', '' );
dom.speakerNotes.setAttribute( 'tabindex', '0' );
// Overlay graphic which is displayed during the paused mode
createSingletonNode( dom.wrapper, 'div', 'pause-overlay', null );
dom.wrapper.setAttribute( 'role', 'application' );
// There can be multiple instances of controls throughout the page
dom.controlsLeft = toArray( document.querySelectorAll( '.navigate-left' ) );
dom.controlsRight = toArray( document.querySelectorAll( '.navigate-right' ) );
dom.controlsUp = toArray( document.querySelectorAll( '.navigate-up' ) );
dom.controlsDown = toArray( document.querySelectorAll( '.navigate-down' ) );
dom.controlsPrev = toArray( document.querySelectorAll( '.navigate-prev' ) );
dom.controlsNext = toArray( document.querySelectorAll( '.navigate-next' ) );
// The right and down arrows in the standard reveal.js controls
dom.controlsRightArrow = dom.controls.querySelector( '.navigate-right' );
dom.controlsDownArrow = dom.controls.querySelector( '.navigate-down' );
dom.statusDiv = createStatusDiv();
}
/**
* Creates a hidden div with role aria-live to announce the
* current slide content. Hide the div off-screen to make it
* available only to Assistive Technologies.
*
* @return {HTMLElement}
*/
function createStatusDiv() {
var statusDiv = document.getElementById( 'aria-status-div' );
if( !statusDiv ) {
statusDiv = document.createElement( 'div' );
statusDiv.style.position = 'absolute';
statusDiv.style.height = '1px';
statusDiv.style.width = '1px';
statusDiv.style.overflow = 'hidden';
statusDiv.style.clip = 'rect( 1px, 1px, 1px, 1px )';
statusDiv.setAttribute( 'id', 'aria-status-div' );
statusDiv.setAttribute( 'aria-live', 'polite' );
statusDiv.setAttribute( 'aria-atomic','true' );
dom.wrapper.appendChild( statusDiv );
}
return statusDiv;
}
/**
* Converts the given HTML element into a string of text
* that can be announced to a screen reader. Hidden
* elements are excluded.
*/
function getStatusText( node ) {
var text = '';
// Text node
if( node.nodeType === 3 ) {
text += node.textContent;
}
// Element node
else if( node.nodeType === 1 ) {
var isAriaHidden = node.getAttribute( 'aria-hidden' );
var isDisplayHidden = window.getComputedStyle( node )['display'] === 'none';
if( isAriaHidden !== 'true' && !isDisplayHidden ) {
toArray( node.childNodes ).forEach( function( child ) {
text += getStatusText( child );
} );
}
}
return text;
}
/**
* Configures the presentation for printing to a static
* PDF.
*/
function setupPDF() {
var slideSize = getComputedSlideSize( window.innerWidth, window.innerHeight );
// Dimensions of the PDF pages
var pageWidth = Math.floor( slideSize.width * ( 1 + config.margin ) ),
pageHeight = Math.floor( slideSize.height * ( 1 + config.margin ) );
// Dimensions of slides within the pages
var slideWidth = slideSize.width,
slideHeight = slideSize.height;
// Let the browser know what page size we want to print
injectStyleSheet( '@page{size:'+ pageWidth +'px '+ pageHeight +'px; margin: 0px;}' );
// Limit the size of certain elements to the dimensions of the slide
injectStyleSheet( '.reveal section>img, .reveal section>video, .reveal section>iframe{max-width: '+ slideWidth +'px; max-height:'+ slideHeight +'px}' );
document.body.classList.add( 'print-pdf' );
document.body.style.width = pageWidth + 'px';
document.body.style.height = pageHeight + 'px';
// Make sure stretch elements fit on slide
layoutSlideContents( slideWidth, slideHeight );
// Add each slide's index as attributes on itself, we need these
// indices to generate slide numbers below
toArray( dom.wrapper.querySelectorAll( HORIZONTAL_SLIDES_SELECTOR ) ).forEach( function( hslide, h ) {
hslide.setAttribute( 'data-index-h', h );
if( hslide.classList.contains( 'stack' ) ) {
toArray( hslide.querySelectorAll( 'section' ) ).forEach( function( vslide, v ) {
vslide.setAttribute( 'data-index-h', h );
vslide.setAttribute( 'data-index-v', v );
} );
}
} );
// Slide and slide background layout
toArray( dom.wrapper.querySelectorAll( SLIDES_SELECTOR ) ).forEach( function( slide ) {
// Vertical stacks are not centred since their section
// children will be
if( slide.classList.contains( 'stack' ) === false ) {
// Center the slide inside of the page, giving the slide some margin
var left = ( pageWidth - slideWidth ) / 2,
top = ( pageHeight - slideHeight ) / 2;
var contentHeight = slide.scrollHeight;
var numberOfPages = Math.max( Math.ceil( contentHeight / pageHeight ), 1 );
// Adhere to configured pages per slide limit
numberOfPages = Math.min( numberOfPages, config.pdfMaxPagesPerSlide );
// Center slides vertically
if( numberOfPages === 1 && config.center || slide.classList.contains( 'center' ) ) {
top = Math.max( ( pageHeight - contentHeight ) / 2, 0 );
}
// Wrap the slide in a page element and hide its overflow
// so that no page ever flows onto another
var page = document.createElement( 'div' );
page.className = 'pdf-page';
page.style.height = ( ( pageHeight + config.pdfPageHeightOffset ) * numberOfPages ) + 'px';
slide.parentNode.insertBefore( page, slide );
page.appendChild( slide );
// Position the slide inside of the page
slide.style.left = left + 'px';
slide.style.top = top + 'px';
slide.style.width = slideWidth + 'px';
if( slide.slideBackgroundElement ) {
page.insertBefore( slide.slideBackgroundElement, slide );
}
// Inject notes if `showNotes` is enabled
if( config.showNotes ) {
// Are there notes for this slide?
var notes = getSlideNotes( slide );
if( notes ) {
var notesSpacing = 8;
var notesLayout = typeof config.showNotes === 'string' ? config.showNotes : 'inline';
var notesElement = document.createElement( 'div' );
notesElement.classList.add( 'speaker-notes' );
notesElement.classList.add( 'speaker-notes-pdf' );
notesElement.setAttribute( 'data-layout', notesLayout );
notesElement.innerHTML = notes;
if( notesLayout === 'separate-page' ) {
page.parentNode.insertBefore( notesElement, page.nextSibling );
}
else {
notesElement.style.left = notesSpacing + 'px';
notesElement.style.bottom = notesSpacing + 'px';
notesElement.style.width = ( pageWidth - notesSpacing*2 ) + 'px';
page.appendChild( notesElement );
}
}
}
// Inject slide numbers if `slideNumbers` are enabled
if( config.slideNumber && /all|print/i.test( config.showSlideNumber ) ) {
var slideNumberH = parseInt( slide.getAttribute( 'data-index-h' ), 10 ) + 1,
slideNumberV = parseInt( slide.getAttribute( 'data-index-v' ), 10 ) + 1;
var numberElement = document.createElement( 'div' );
numberElement.classList.add( 'slide-number' );
numberElement.classList.add( 'slide-number-pdf' );
numberElement.innerHTML = formatSlideNumber( slideNumberH, '.', slideNumberV );
page.appendChild( numberElement );
}
}
} );
// Show all fragments
toArray( dom.wrapper.querySelectorAll( SLIDES_SELECTOR + ' .fragment' ) ).forEach( function( fragment ) {
fragment.classList.add( 'visible' );
} );
// Notify subscribers that the PDF layout is good to go
dispatchEvent( 'pdf-ready' );
}
/**
* This is an unfortunate necessity. Some actions such as
* an input field being focused in an iframe or using the
* keyboard to expand text selection beyond the bounds of
* a slide can trigger our content to be pushed out of view.
* This scrolling can not be prevented by hiding overflow in
* CSS (we already do) so we have to resort to repeatedly
* checking if the slides have been offset :(
*/
function setupScrollPrevention() {
setInterval( function() {
if( dom.wrapper.scrollTop !== 0 || dom.wrapper.scrollLeft !== 0 ) {
dom.wrapper.scrollTop = 0;
dom.wrapper.scrollLeft = 0;
}
}, 1000 );
}
/**
* Creates an HTML element and returns a reference to it.
* If the element already exists the existing instance will
* be returned.
*
* @param {HTMLElement} container
* @param {string} tagname
* @param {string} classname
* @param {string} innerHTML
*
* @return {HTMLElement}
*/
function createSingletonNode( container, tagname, classname, innerHTML ) {
// Find all nodes matching the description
var nodes = container.querySelectorAll( '.' + classname );
// Check all matches to find one which is a direct child of
// the specified container
for( var i = 0; i < nodes.length; i++ ) {
var testNode = nodes[i];
if( testNode.parentNode === container ) {
return testNode;
}
}
// If no node was found, create it now
var node = document.createElement( tagname );
node.className = classname;
if( typeof innerHTML === 'string' ) {
node.innerHTML = innerHTML;
}
container.appendChild( node );
return node;
}
/**
* Creates the slide background elements and appends them
* to the background container. One element is created per
* slide no matter if the given slide has visible background.
*/
function createBackgrounds() {
var printMode = isPrintingPDF();
// Clear prior backgrounds
dom.background.innerHTML = '';
dom.background.classList.add( 'no-transition' );
// Iterate over all horizontal slides
toArray( dom.wrapper.querySelectorAll( HORIZONTAL_SLIDES_SELECTOR ) ).forEach( function( slideh ) {
var backgroundStack = createBackground( slideh, dom.background );
// Iterate over all vertical slides
toArray( slideh.querySelectorAll( 'section' ) ).forEach( function( slidev ) {
createBackground( slidev, backgroundStack );
backgroundStack.classList.add( 'stack' );
} );
} );
// Add parallax background if specified
if( config.parallaxBackgroundImage ) {
dom.background.style.backgroundImage = 'url("' + config.parallaxBackgroundImage + '")';
dom.background.style.backgroundSize = config.parallaxBackgroundSize;
// Make sure the below properties are set on the element - these properties are
// needed for proper transitions to be set on the element via CSS. To remove
// annoying background slide-in effect when the presentation starts, apply
// these properties after short time delay
setTimeout( function() {
dom.wrapper.classList.add( 'has-parallax-background' );
}, 1 );
}
else {
dom.background.style.backgroundImage = '';
dom.wrapper.classList.remove( 'has-parallax-background' );
}
}
/**
* Creates a background for the given slide.
*
* @param {HTMLElement} slide
* @param {HTMLElement} container The element that the background
* should be appended to
* @return {HTMLElement} New background div
*/
function createBackground( slide, container ) {
var data = {
background: slide.getAttribute( 'data-background' ),
backgroundSize: slide.getAttribute( 'data-background-size' ),
backgroundImage: slide.getAttribute( 'data-background-image' ),
backgroundVideo: slide.getAttribute( 'data-background-video' ),
backgroundIframe: slide.getAttribute( 'data-background-iframe' ),
backgroundColor: slide.getAttribute( 'data-background-color' ),
backgroundRepeat: slide.getAttribute( 'data-background-repeat' ),
backgroundPosition: slide.getAttribute( 'data-background-position' ),
backgroundTransition: slide.getAttribute( 'data-background-transition' )
};
var element = document.createElement( 'div' );
// Carry over custom classes from the slide to the background
element.className = 'slide-background ' + slide.className.replace( /present|past|future/, '' );
if( data.background ) {
// Auto-wrap image urls in url(...)
if( /^(http|file|\/\/)/gi.test( data.background ) || /\.(svg|png|jpg|jpeg|gif|bmp)([?#]|$)/gi.test( data.background ) ) {
slide.setAttribute( 'data-background-image', data.background );
}
else {
element.style.background = data.background;
}
}
// Create a hash for this combination of background settings.
// This is used to determine when two slide backgrounds are
// the same.
if( data.background || data.backgroundColor || data.backgroundImage || data.backgroundVideo || data.backgroundIframe ) {
element.setAttribute( 'data-background-hash', data.background +
data.backgroundSize +
data.backgroundImage +
data.backgroundVideo +
data.backgroundIframe +
data.backgroundColor +
data.backgroundRepeat +
data.backgroundPosition +
data.backgroundTransition );
}
// Additional and optional background properties
if( data.backgroundSize ) element.style.backgroundSize = data.backgroundSize;
if( data.backgroundSize ) element.setAttribute( 'data-background-size', data.backgroundSize );
if( data.backgroundColor ) element.style.backgroundColor = data.backgroundColor;
if( data.backgroundRepeat ) element.style.backgroundRepeat = data.backgroundRepeat;
if( data.backgroundPosition ) element.style.backgroundPosition = data.backgroundPosition;
if( data.backgroundTransition ) element.setAttribute( 'data-background-transition', data.backgroundTransition );
container.appendChild( element );
// If backgrounds are being recreated, clear old classes
slide.classList.remove( 'has-dark-background' );
slide.classList.remove( 'has-light-background' );
slide.slideBackgroundElement = element;
// If this slide has a background color, add a class that
// signals if it is light or dark. If the slide has no background
// color, no class will be set
var computedBackgroundStyle = window.getComputedStyle( element );
if( computedBackgroundStyle && computedBackgroundStyle.backgroundColor ) {
var rgb = colorToRgb( computedBackgroundStyle.backgroundColor );
// Ignore fully transparent backgrounds. Some browsers return
// rgba(0,0,0,0) when reading the computed background color of
// an element with no background
if( rgb && rgb.a !== 0 ) {
if( colorBrightness( computedBackgroundStyle.backgroundColor ) < 128 ) {
slide.classList.add( 'has-dark-background' );
}
else {
slide.classList.add( 'has-light-background' );
}
}
}
return element;
}
/**
* Registers a listener to postMessage events, this makes it
* possible to call all reveal.js API methods from another
* window. For example:
*
* revealWindow.postMessage( JSON.stringify({
* method: 'slide',
* args: [ 2 ]
* }), '*' );
*/
function setupPostMessage() {
if( config.postMessage ) {
window.addEventListener( 'message', function ( event ) {
var data = event.data;
// Make sure we're dealing with JSON
if( typeof data === 'string' && data.charAt( 0 ) === '{' && data.charAt( data.length - 1 ) === '}' ) {
data = JSON.parse( data );
// Check if the requested method can be found
if( data.method && typeof Reveal[data.method] === 'function' ) {
Reveal[data.method].apply( Reveal, data.args );
}
}
}, false );
}
}
/**
* Applies the configuration settings from the config
* object. May be called multiple times.
*
* @param {object} options
*/
function configure( options ) {
var oldTransition = config.transition;
// New config options may be passed when this method
// is invoked through the API after initialization
if( typeof options === 'object' ) extend( config, options );
// Abort if reveal.js hasn't finished loading, config
// changes will be applied automatically once loading
// finishes
if( loaded === false ) return;
var numberOfSlides = dom.wrapper.querySelectorAll( SLIDES_SELECTOR ).length;
// Remove the previously configured transition class
dom.wrapper.classList.remove( oldTransition );
// Force linear transition based on browser capabilities
if( features.transforms3d === false ) config.transition = 'linear';
dom.wrapper.classList.add( config.transition );
dom.wrapper.setAttribute( 'data-transition-speed', config.transitionSpeed );
dom.wrapper.setAttribute( 'data-background-transition', config.backgroundTransition );
dom.controls.style.display = config.controls ? 'block' : 'none';
dom.progress.style.display = config.progress ? 'block' : 'none';
dom.controls.setAttribute( 'data-controls-layout', config.controlsLayout );
dom.controls.setAttribute( 'data-controls-back-arrows', config.controlsBackArrows );
if( config.shuffle ) {
shuffle();
}
if( config.rtl ) {
dom.wrapper.classList.add( 'rtl' );
}
else {
dom.wrapper.classList.remove( 'rtl' );
}
if( config.center ) {
dom.wrapper.classList.add( 'center' );
}
else {
dom.wrapper.classList.remove( 'center' );
}
// Exit the paused mode if it was configured off
if( config.pause === false ) {
resume();
}
if( config.showNotes ) {
dom.speakerNotes.setAttribute( 'data-layout', typeof config.showNotes === 'string' ? config.showNotes : 'inline' );
}
if( config.mouseWheel ) {
document.addEventListener( 'DOMMouseScroll', onDocumentMouseScroll, false ); // FF
document.addEventListener( 'mousewheel', onDocumentMouseScroll, false );
}
else {
document.removeEventListener( 'DOMMouseScroll', onDocumentMouseScroll, false ); // FF
document.removeEventListener( 'mousewheel', onDocumentMouseScroll, false );
}
// Rolling 3D links
if( config.rollingLinks ) {
enableRollingLinks();
}
else {
disableRollingLinks();
}
// Iframe link previews
if( config.previewLinks ) {
enablePreviewLinks();
disablePreviewLinks( '[data-preview-link=false]' );
}
else {
disablePreviewLinks();
enablePreviewLinks( '[data-preview-link]:not([data-preview-link=false])' );
}
// Remove existing auto-slide controls
if( autoSlidePlayer ) {
autoSlidePlayer.destroy();
autoSlidePlayer = null;
}
// Generate auto-slide controls if needed
if( numberOfSlides > 1 && config.autoSlide && config.autoSlideStoppable && features.canvas && features.requestAnimationFrame ) {
autoSlidePlayer = new Playback( dom.wrapper, function() {
return Math.min( Math.max( ( Date.now() - autoSlideStartTime ) / autoSlide, 0 ), 1 );
} );
autoSlidePlayer.on( 'click', onAutoSlidePlayerClick );
autoSlidePaused = false;
}
// When fragments are turned off they should be visible
if( config.fragments === false ) {
toArray( dom.slides.querySelectorAll( '.fragment' ) ).forEach( function( element ) {
element.classList.add( 'visible' );
element.classList.remove( 'current-fragment' );
} );
}
// Slide numbers
var slideNumberDisplay = 'none';
if( config.slideNumber && !isPrintingPDF() ) {
if( config.showSlideNumber === 'all' ) {
slideNumberDisplay = 'block';
}
else if( config.showSlideNumber === 'speaker' && isSpeakerNotes() ) {
slideNumberDisplay = 'block';
}
}
dom.slideNumber.style.display = slideNumberDisplay;
sync();
}
/**
* Binds all event listeners.
*/
function addEventListeners() {
eventsAreBound = true;
window.addEventListener( 'hashchange', onWindowHashChange, false );
window.addEventListener( 'resize', onWindowResize, false );
if( config.touch ) {
dom.wrapper.addEventListener( 'touchstart', onTouchStart, false );
dom.wrapper.addEventListener( 'touchmove', onTouchMove, false );
dom.wrapper.addEventListener( 'touchend', onTouchEnd, false );
// Support pointer-style touch interaction as well
if( window.navigator.pointerEnabled ) {
// IE 11 uses un-prefixed version of pointer events
dom.wrapper.addEventListener( 'pointerdown', onPointerDown, false );
dom.wrapper.addEventListener( 'pointermove', onPointerMove, false );
dom.wrapper.addEventListener( 'pointerup', onPointerUp, false );
}
else if( window.navigator.msPointerEnabled ) {
// IE 10 uses prefixed version of pointer events
dom.wrapper.addEventListener( 'MSPointerDown', onPointerDown, false );
dom.wrapper.addEventListener( 'MSPointerMove', onPointerMove, false );
dom.wrapper.addEventListener( 'MSPointerUp', onPointerUp, false );
}
}
if( config.keyboard ) {
document.addEventListener( 'keydown', onDocumentKeyDown, false );
document.addEventListener( 'keypress', onDocumentKeyPress, false );
}
if( config.progress && dom.progress ) {
dom.progress.addEventListener( 'click', onProgressClicked, false );
}
if( config.focusBodyOnPageVisibilityChange ) {
var visibilityChange;
if( 'hidden' in document ) {
visibilityChange = 'visibilitychange';
}
else if( 'msHidden' in document ) {
visibilityChange = 'msvisibilitychange';
}
else if( 'webkitHidden' in document ) {
visibilityChange = 'webkitvisibilitychange';
}
if( visibilityChange ) {
document.addEventListener( visibilityChange, onPageVisibilityChange, false );
}
}
// Listen to both touch and click events, in case the device
// supports both
var pointerEvents = [ 'touchstart', 'click' ];
// Only support touch for Android, fixes double navigations in
// stock browser
if( UA.match( /android/gi ) ) {
pointerEvents = [ 'touchstart' ];
}
pointerEvents.forEach( function( eventName ) {
dom.controlsLeft.forEach( function( el ) { el.addEventListener( eventName, onNavigateLeftClicked, false ); } );
dom.controlsRight.forEach( function( el ) { el.addEventListener( eventName, onNavigateRightClicked, false ); } );
dom.controlsUp.forEach( function( el ) { el.addEventListener( eventName, onNavigateUpClicked, false ); } );
dom.controlsDown.forEach( function( el ) { el.addEventListener( eventName, onNavigateDownClicked, false ); } );
dom.controlsPrev.forEach( function( el ) { el.addEventListener( eventName, onNavigatePrevClicked, false ); } );
dom.controlsNext.forEach( function( el ) { el.addEventListener( eventName, onNavigateNextClicked, false ); } );
} );
}
/**
* Unbinds all event listeners.
*/
function removeEventListeners() {
eventsAreBound = false;
document.removeEventListener( 'keydown', onDocumentKeyDown, false );
document.removeEventListener( 'keypress', onDocumentKeyPress, false );
window.removeEventListener( 'hashchange', onWindowHashChange, false );
window.removeEventListener( 'resize', onWindowResize, false );
dom.wrapper.removeEventListener( 'touchstart', onTouchStart, false );
dom.wrapper.removeEventListener( 'touchmove', onTouchMove, false );
dom.wrapper.removeEventListener( 'touchend', onTouchEnd, false );
// IE11
if( window.navigator.pointerEnabled ) {
dom.wrapper.removeEventListener( 'pointerdown', onPointerDown, false );
dom.wrapper.removeEventListener( 'pointermove', onPointerMove, false );
dom.wrapper.removeEventListener( 'pointerup', onPointerUp, false );
}
// IE10
else if( window.navigator.msPointerEnabled ) {
dom.wrapper.removeEventListener( 'MSPointerDown', onPointerDown, false );
dom.wrapper.removeEventListener( 'MSPointerMove', onPointerMove, false );
dom.wrapper.removeEventListener( 'MSPointerUp', onPointerUp, false );
}
if ( config.progress && dom.progress ) {
dom.progress.removeEventListener( 'click', onProgressClicked, false );
}
[ 'touchstart', 'click' ].forEach( function( eventName ) {
dom.controlsLeft.forEach( function( el ) { el.removeEventListener( eventName, onNavigateLeftClicked, false ); } );
dom.controlsRight.forEach( function( el ) { el.removeEventListener( eventName, onNavigateRightClicked, false ); } );
dom.controlsUp.forEach( function( el ) { el.removeEventListener( eventName, onNavigateUpClicked, false ); } );
dom.controlsDown.forEach( function( el ) { el.removeEventListener( eventName, onNavigateDownClicked, false ); } );
dom.controlsPrev.forEach( function( el ) { el.removeEventListener( eventName, onNavigatePrevClicked, false ); } );
dom.controlsNext.forEach( function( el ) { el.removeEventListener( eventName, onNavigateNextClicked, false ); } );
} );
}
/**
* Extend object a with the properties of object b.
* If there's a conflict, object b takes precedence.
*
* @param {object} a
* @param {object} b
*/
function extend( a, b ) {
for( var i in b ) {
a[ i ] = b[ i ];
}
return a;
}
/**
* Converts the target object to an array.
*
* @param {object} o
* @return {object[]}
*/
function toArray( o ) {
return Array.prototype.slice.call( o );
}
/**
* Utility for deserializing a value.
*
* @param {*} value
* @return {*}
*/
function deserialize( value ) {
if( typeof value === 'string' ) {
if( value === 'null' ) return null;
else if( value === 'true' ) return true;
else if( value === 'false' ) return false;
else if( value.match( /^-?[\d\.]+$/ ) ) return parseFloat( value );
}
return value;
}
/**
* Measures the distance in pixels between point a
* and point b.
*
* @param {object} a point with x/y properties
* @param {object} b point with x/y properties
*
* @return {number}
*/
function distanceBetween( a, b ) {
var dx = a.x - b.x,
dy = a.y - b.y;
return Math.sqrt( dx*dx + dy*dy );
}
/**
* Applies a CSS transform to the target element.
*
* @param {HTMLElement} element
* @param {string} transform
*/
function transformElement( element, transform ) {
element.style.WebkitTransform = transform;
element.style.MozTransform = transform;
element.style.msTransform = transform;
element.style.transform = transform;
}
/**
* Applies CSS transforms to the slides container. The container
* is transformed from two separate sources: layout and the overview
* mode.
*
* @param {object} transforms
*/
function transformSlides( transforms ) {
// Pick up new transforms from arguments
if( typeof transforms.layout === 'string' ) slidesTransform.layout = transforms.layout;
if( typeof transforms.overview === 'string' ) slidesTransform.overview = transforms.overview;
// Apply the transforms to the slides container
if( slidesTransform.layout ) {
transformElement( dom.slides, slidesTransform.layout + ' ' + slidesTransform.overview );
}
else {
transformElement( dom.slides, slidesTransform.overview );
}
}
/**
* Injects the given CSS styles into the DOM.
*
* @param {string} value
*/
function injectStyleSheet( value ) {
var tag = document.createElement( 'style' );
tag.type = 'text/css';
if( tag.styleSheet ) {
tag.styleSheet.cssText = value;
}
else {
tag.appendChild( document.createTextNode( value ) );
}
document.getElementsByTagName( 'head' )[0].appendChild( tag );
}
/**
* Find the closest parent that matches the given
* selector.
*
* @param {HTMLElement} target The child element
* @param {String} selector The CSS selector to match
* the parents against
*
* @return {HTMLElement} The matched parent or null
* if no matching parent was found
*/
function closestParent( target, selector ) {
var parent = target.parentNode;
while( parent ) {
// There's some overhead doing this each time, we don't
// want to rewrite the element prototype but should still
// be enough to feature detect once at startup...
var matchesMethod = parent.matches || parent.matchesSelector || parent.msMatchesSelector;
// If we find a match, we're all set
if( matchesMethod && matchesMethod.call( parent, selector ) ) {
return parent;
}
// Keep searching
parent = parent.parentNode;
}
return null;
}
/**
* Converts various color input formats to an {r:0,g:0,b:0} object.
*
* @param {string} color The string representation of a color
* @example
* colorToRgb('#000');
* @example
* colorToRgb('#000000');
* @example
* colorToRgb('rgb(0,0,0)');
* @example
* colorToRgb('rgba(0,0,0)');
*
* @return {{r: number, g: number, b: number, [a]: number}|null}
*/
function colorToRgb( color ) {
var hex3 = color.match( /^#([0-9a-f]{3})$/i );
if( hex3 && hex3[1] ) {
hex3 = hex3[1];
return {
r: parseInt( hex3.charAt( 0 ), 16 ) * 0x11,
g: parseInt( hex3.charAt( 1 ), 16 ) * 0x11,
b: parseInt( hex3.charAt( 2 ), 16 ) * 0x11
};
}
var hex6 = color.match( /^#([0-9a-f]{6})$/i );
if( hex6 && hex6[1] ) {
hex6 = hex6[1];
return {
r: parseInt( hex6.substr( 0, 2 ), 16 ),
g: parseInt( hex6.substr( 2, 2 ), 16 ),
b: parseInt( hex6.substr( 4, 2 ), 16 )
};
}
var rgb = color.match( /^rgb\s*\(\s*(\d+)\s*,\s*(\d+)\s*,\s*(\d+)\s*\)$/i );
if( rgb ) {
return {
r: parseInt( rgb[1], 10 ),
g: parseInt( rgb[2], 10 ),
b: parseInt( rgb[3], 10 )
};
}
var rgba = color.match( /^rgba\s*\(\s*(\d+)\s*,\s*(\d+)\s*,\s*(\d+)\s*\,\s*([\d]+|[\d]*.[\d]+)\s*\)$/i );
if( rgba ) {
return {
r: parseInt( rgba[1], 10 ),
g: parseInt( rgba[2], 10 ),
b: parseInt( rgba[3], 10 ),
a: parseFloat( rgba[4] )
};
}
return null;
}
/**
* Calculates brightness on a scale of 0-255.
*
* @param {string} color See colorToRgb for supported formats.
* @see {@link colorToRgb}
*/
function colorBrightness( color ) {
if( typeof color === 'string' ) color = colorToRgb( color );
if( color ) {
return ( color.r * 299 + color.g * 587 + color.b * 114 ) / 1000;
}
return null;
}
/**
* Returns the remaining height within the parent of the
* target element.
*
* remaining height = [ configured parent height ] - [ current parent height ]
*
* @param {HTMLElement} element
* @param {number} [height]
*/
function getRemainingHeight( element, height ) {
height = height || 0;
if( element ) {
var newHeight, oldHeight = element.style.height;
// Change the .stretch element height to 0 in order find the height of all
// the other elements
element.style.height = '0px';
newHeight = height - element.parentNode.offsetHeight;
// Restore the old height, just in case
element.style.height = oldHeight + 'px';
return newHeight;
}
return height;
}
/**
* Checks if this instance is being used to print a PDF.
*/
function isPrintingPDF() {
return ( /print-pdf/gi ).test( window.location.search );
}
/**
* Hides the address bar if we're on a mobile device.
*/
function hideAddressBar() {
if( config.hideAddressBar && isMobileDevice ) {
// Events that should trigger the address bar to hide
window.addEventListener( 'load', removeAddressBar, false );
window.addEventListener( 'orientationchange', removeAddressBar, false );
}
}
/**
* Causes the address bar to hide on mobile devices,
* more vertical space ftw.
*/
function removeAddressBar() {
setTimeout( function() {
window.scrollTo( 0, 1 );
}, 10 );
}
/**
* Dispatches an event of the specified type from the
* reveal DOM element.
*/
function dispatchEvent( type, args ) {
var event = document.createEvent( 'HTMLEvents', 1, 2 );
event.initEvent( type, true, true );
extend( event, args );
dom.wrapper.dispatchEvent( event );
// If we're in an iframe, post each reveal.js event to the
// parent window. Used by the notes plugin
if( config.postMessageEvents && window.parent !== window.self ) {
window.parent.postMessage( JSON.stringify({ namespace: 'reveal', eventName: type, state: getState() }), '*' );
}
}
/**
* Wrap all links in 3D goodness.
*/
function enableRollingLinks() {
if( features.transforms3d && !( 'msPerspective' in document.body.style ) ) {
var anchors = dom.wrapper.querySelectorAll( SLIDES_SELECTOR + ' a' );
for( var i = 0, len = anchors.length; i < len; i++ ) {
var anchor = anchors[i];
if( anchor.textContent && !anchor.querySelector( '*' ) && ( !anchor.className || !anchor.classList.contains( anchor, 'roll' ) ) ) {
var span = document.createElement('span');
span.setAttribute('data-title', anchor.text);
span.innerHTML = anchor.innerHTML;
anchor.classList.add( 'roll' );
anchor.innerHTML = '';
anchor.appendChild(span);
}
}
}
}
/**
* Unwrap all 3D links.
*/
function disableRollingLinks() {
var anchors = dom.wrapper.querySelectorAll( SLIDES_SELECTOR + ' a.roll' );
for( var i = 0, len = anchors.length; i < len; i++ ) {
var anchor = anchors[i];
var span = anchor.querySelector( 'span' );
if( span ) {
anchor.classList.remove( 'roll' );
anchor.innerHTML = span.innerHTML;
}
}
}
/**
* Bind preview frame links.
*
* @param {string} [selector=a] - selector for anchors
*/
function enablePreviewLinks( selector ) {
var anchors = toArray( document.querySelectorAll( selector ? selector : 'a' ) );
anchors.forEach( function( element ) {
if( /^(http|www)/gi.test( element.getAttribute( 'href' ) ) ) {
element.addEventListener( 'click', onPreviewLinkClicked, false );
}
} );
}
/**
* Unbind preview frame links.
*/
function disablePreviewLinks( selector ) {
var anchors = toArray( document.querySelectorAll( selector ? selector : 'a' ) );
anchors.forEach( function( element ) {
if( /^(http|www)/gi.test( element.getAttribute( 'href' ) ) ) {
element.removeEventListener( 'click', onPreviewLinkClicked, false );
}
} );
}
/**
* Opens a preview window for the target URL.
*
* @param {string} url - url for preview iframe src
*/
function showPreview( url ) {
closeOverlay();
dom.overlay = document.createElement( 'div' );
dom.overlay.classList.add( 'overlay' );
dom.overlay.classList.add( 'overlay-preview' );
dom.wrapper.appendChild( dom.overlay );
dom.overlay.innerHTML = [
'<header>',
'<a class="close" href="#"><span class="icon"></span></a>',
'<a class="external" href="'+ url +'" target="_blank"><span class="icon"></span></a>',
'</header>',
'<div class="spinner"></div>',
'<div class="viewport">',
'<iframe src="'+ url +'"></iframe>',
'<small class="viewport-inner">',
'<span class="x-frame-error">Unable to load iframe. This is likely due to the site\'s policy (x-frame-options).</span>',
'</small>',
'</div>'
].join('');
dom.overlay.querySelector( 'iframe' ).addEventListener( 'load', function( event ) {
dom.overlay.classList.add( 'loaded' );
}, false );
dom.overlay.querySelector( '.close' ).addEventListener( 'click', function( event ) {
closeOverlay();
event.preventDefault();
}, false );
dom.overlay.querySelector( '.external' ).addEventListener( 'click', function( event ) {
closeOverlay();
}, false );
setTimeout( function() {
dom.overlay.classList.add( 'visible' );
}, 1 );
}
/**
* Open or close help overlay window.
*
* @param {Boolean} [override] Flag which overrides the
* toggle logic and forcibly sets the desired state. True means
* help is open, false means it's closed.
*/
function toggleHelp( override ){
if( typeof override === 'boolean' ) {
override ? showHelp() : closeOverlay();
}
else {
if( dom.overlay ) {
closeOverlay();
}
else {
showHelp();
}
}
}
/**
* Opens an overlay window with help material.
*/
function showHelp() {
if( config.help ) {
closeOverlay();
dom.overlay = document.createElement( 'div' );
dom.overlay.classList.add( 'overlay' );
dom.overlay.classList.add( 'overlay-help' );
dom.wrapper.appendChild( dom.overlay );
var html = '<p class="title">Keyboard Shortcuts</p><br/>';
html += '<table><th>KEY</th><th>ACTION</th>';
for( var key in keyboardShortcuts ) {
html += '<tr><td>' + key + '</td><td>' + keyboardShortcuts[ key ] + '</td></tr>';
}
html += '</table>';
dom.overlay.innerHTML = [
'<header>',
'<a class="close" href="#"><span class="icon"></span></a>',
'</header>',
'<div class="viewport">',
'<div class="viewport-inner">'+ html +'</div>',
'</div>'
].join('');
dom.overlay.querySelector( '.close' ).addEventListener( 'click', function( event ) {
closeOverlay();
event.preventDefault();
}, false );
setTimeout( function() {
dom.overlay.classList.add( 'visible' );
}, 1 );
}
}
/**
* Closes any currently open overlay.
*/
function closeOverlay() {
if( dom.overlay ) {
dom.overlay.parentNode.removeChild( dom.overlay );
dom.overlay = null;
}
}
/**
* Applies JavaScript-controlled layout rules to the
* presentation.
*/
function layout() {
if( dom.wrapper && !isPrintingPDF() ) {
var size = getComputedSlideSize();
// Layout the contents of the slides
layoutSlideContents( config.width, config.height );
dom.slides.style.width = size.width + 'px';
dom.slides.style.height = size.height + 'px';
// Determine scale of content to fit within available space
scale = Math.min( size.presentationWidth / size.width, size.presentationHeight / size.height );
// Respect max/min scale settings
scale = Math.max( scale, config.minScale );
scale = Math.min( scale, config.maxScale );
// Don't apply any scaling styles if scale is 1
if( scale === 1 ) {
dom.slides.style.zoom = '';
dom.slides.style.left = '';
dom.slides.style.top = '';
dom.slides.style.bottom = '';
dom.slides.style.right = '';
transformSlides( { layout: '' } );
}
else {
// Prefer zoom for scaling up so that content remains crisp.
// Don't use zoom to scale down since that can lead to shifts
// in text layout/line breaks.
if( scale > 1 && features.zoom ) {
dom.slides.style.zoom = scale;
dom.slides.style.left = '';
dom.slides.style.top = '';
dom.slides.style.bottom = '';
dom.slides.style.right = '';
transformSlides( { layout: '' } );
}
// Apply scale transform as a fallback
else {
dom.slides.style.zoom = '';
dom.slides.style.left = '50%';
dom.slides.style.top = '50%';
dom.slides.style.bottom = 'auto';
dom.slides.style.right = 'auto';
transformSlides( { layout: 'translate(-50%, -50%) scale('+ scale +')' } );
}
}
// Select all slides, vertical and horizontal
var slides = toArray( dom.wrapper.querySelectorAll( SLIDES_SELECTOR ) );
for( var i = 0, len = slides.length; i < len; i++ ) {
var slide = slides[ i ];
// Don't bother updating invisible slides
if( slide.style.display === 'none' ) {
continue;
}
if( config.center || slide.classList.contains( 'center' ) ) {
// Vertical stacks are not centred since their section
// children will be
if( slide.classList.contains( 'stack' ) ) {
slide.style.top = 0;
}
else {
slide.style.top = Math.max( ( size.height - slide.scrollHeight ) / 2, 0 ) + 'px';
}
}
else {
slide.style.top = '';
}
}
updateProgress();
updateParallax();
if( isOverview() ) {
updateOverview();
}
}
}
/**
* Applies layout logic to the contents of all slides in
* the presentation.
*
* @param {string|number} width
* @param {string|number} height
*/
function layoutSlideContents( width, height ) {
// Handle sizing of elements with the 'stretch' class
toArray( dom.slides.querySelectorAll( 'section > .stretch' ) ).forEach( function( element ) {
// Determine how much vertical space we can use
var remainingHeight = getRemainingHeight( element, height );
// Consider the aspect ratio of media elements
if( /(img|video)/gi.test( element.nodeName ) ) {
var nw = element.naturalWidth || element.videoWidth,
nh = element.naturalHeight || element.videoHeight;
var es = Math.min( width / nw, remainingHeight / nh );
element.style.width = ( nw * es ) + 'px';
element.style.height = ( nh * es ) + 'px';
}
else {
element.style.width = width + 'px';
element.style.height = remainingHeight + 'px';
}
} );
}
/**
* Calculates the computed pixel size of our slides. These
* values are based on the width and height configuration
* options.
*
* @param {number} [presentationWidth=dom.wrapper.offsetWidth]
* @param {number} [presentationHeight=dom.wrapper.offsetHeight]
*/
function getComputedSlideSize( presentationWidth, presentationHeight ) {
var size = {
// Slide size
width: config.width,
height: config.height,
// Presentation size
presentationWidth: presentationWidth || dom.wrapper.offsetWidth,
presentationHeight: presentationHeight || dom.wrapper.offsetHeight
};
// Reduce available space by margin
size.presentationWidth -= ( size.presentationWidth * config.margin );
size.presentationHeight -= ( size.presentationHeight * config.margin );
// Slide width may be a percentage of available width
if( typeof size.width === 'string' && /%$/.test( size.width ) ) {
size.width = parseInt( size.width, 10 ) / 100 * size.presentationWidth;
}
// Slide height may be a percentage of available height
if( typeof size.height === 'string' && /%$/.test( size.height ) ) {
size.height = parseInt( size.height, 10 ) / 100 * size.presentationHeight;
}
return size;
}
/**
* Stores the vertical index of a stack so that the same
* vertical slide can be selected when navigating to and
* from the stack.
*
* @param {HTMLElement} stack The vertical stack element
* @param {string|number} [v=0] Index to memorize
*/
function setPreviousVerticalIndex( stack, v ) {
if( typeof stack === 'object' && typeof stack.setAttribute === 'function' ) {
stack.setAttribute( 'data-previous-indexv', v || 0 );
}
}
/**
* Retrieves the vertical index which was stored using
* #setPreviousVerticalIndex() or 0 if no previous index
* exists.
*
* @param {HTMLElement} stack The vertical stack element
*/
function getPreviousVerticalIndex( stack ) {
if( typeof stack === 'object' && typeof stack.setAttribute === 'function' && stack.classList.contains( 'stack' ) ) {
// Prefer manually defined start-indexv
var attributeName = stack.hasAttribute( 'data-start-indexv' ) ? 'data-start-indexv' : 'data-previous-indexv';
return parseInt( stack.getAttribute( attributeName ) || 0, 10 );
}
return 0;
}
/**
* Displays the overview of slides (quick nav) by scaling
* down and arranging all slide elements.
*/
function activateOverview() {
// Only proceed if enabled in config
if( config.overview && !isOverview() ) {
overview = true;
dom.wrapper.classList.add( 'overview' );
dom.wrapper.classList.remove( 'overview-deactivating' );
if( features.overviewTransitions ) {
setTimeout( function() {
dom.wrapper.classList.add( 'overview-animated' );
}, 1 );
}
// Don't auto-slide while in overview mode
cancelAutoSlide();
// Move the backgrounds element into the slide container to
// that the same scaling is applied
dom.slides.appendChild( dom.background );
// Clicking on an overview slide navigates to it
toArray( dom.wrapper.querySelectorAll( SLIDES_SELECTOR ) ).forEach( function( slide ) {
if( !slide.classList.contains( 'stack' ) ) {
slide.addEventListener( 'click', onOverviewSlideClicked, true );
}
} );
// Calculate slide sizes
var margin = 70;
var slideSize = getComputedSlideSize();
overviewSlideWidth = slideSize.width + margin;
overviewSlideHeight = slideSize.height + margin;
// Reverse in RTL mode
if( config.rtl ) {
overviewSlideWidth = -overviewSlideWidth;
}
updateSlidesVisibility();
layoutOverview();
updateOverview();
layout();
// Notify observers of the overview showing
dispatchEvent( 'overviewshown', {
'indexh': indexh,
'indexv': indexv,
'currentSlide': currentSlide
} );
}
}
/**
* Uses CSS transforms to position all slides in a grid for
* display inside of the overview mode.
*/
function layoutOverview() {
// Layout slides
toArray( dom.wrapper.querySelectorAll( HORIZONTAL_SLIDES_SELECTOR ) ).forEach( function( hslide, h ) {
hslide.setAttribute( 'data-index-h', h );
transformElement( hslide, 'translate3d(' + ( h * overviewSlideWidth ) + 'px, 0, 0)' );
if( hslide.classList.contains( 'stack' ) ) {
toArray( hslide.querySelectorAll( 'section' ) ).forEach( function( vslide, v ) {
vslide.setAttribute( 'data-index-h', h );
vslide.setAttribute( 'data-index-v', v );
transformElement( vslide, 'translate3d(0, ' + ( v * overviewSlideHeight ) + 'px, 0)' );
} );
}
} );
// Layout slide backgrounds
toArray( dom.background.childNodes ).forEach( function( hbackground, h ) {
transformElement( hbackground, 'translate3d(' + ( h * overviewSlideWidth ) + 'px, 0, 0)' );
toArray( hbackground.querySelectorAll( '.slide-background' ) ).forEach( function( vbackground, v ) {
transformElement( vbackground, 'translate3d(0, ' + ( v * overviewSlideHeight ) + 'px, 0)' );
} );
} );
}
/**
* Moves the overview viewport to the current slides.
* Called each time the current slide changes.
*/
function updateOverview() {
var vmin = Math.min( window.innerWidth, window.innerHeight );
var scale = Math.max( vmin / 5, 150 ) / vmin;
transformSlides( {
overview: [
'scale('+ scale +')',
'translateX('+ ( -indexh * overviewSlideWidth ) +'px)',
'translateY('+ ( -indexv * overviewSlideHeight ) +'px)'
].join( ' ' )
} );
}
/**
* Exits the slide overview and enters the currently
* active slide.
*/
function deactivateOverview() {
// Only proceed if enabled in config
if( config.overview ) {
overview = false;
dom.wrapper.classList.remove( 'overview' );
dom.wrapper.classList.remove( 'overview-animated' );
// Temporarily add a class so that transitions can do different things
// depending on whether they are exiting/entering overview, or just
// moving from slide to slide
dom.wrapper.classList.add( 'overview-deactivating' );
setTimeout( function () {
dom.wrapper.classList.remove( 'overview-deactivating' );
}, 1 );
// Move the background element back out
dom.wrapper.appendChild( dom.background );
// Clean up changes made to slides
toArray( dom.wrapper.querySelectorAll( SLIDES_SELECTOR ) ).forEach( function( slide ) {
transformElement( slide, '' );
slide.removeEventListener( 'click', onOverviewSlideClicked, true );
} );
// Clean up changes made to backgrounds
toArray( dom.background.querySelectorAll( '.slide-background' ) ).forEach( function( background ) {
transformElement( background, '' );
} );
transformSlides( { overview: '' } );
slide( indexh, indexv );
layout();
cueAutoSlide();
// Notify observers of the overview hiding
dispatchEvent( 'overviewhidden', {
'indexh': indexh,
'indexv': indexv,
'currentSlide': currentSlide
} );
}
}
/**
* Toggles the slide overview mode on and off.
*
* @param {Boolean} [override] Flag which overrides the
* toggle logic and forcibly sets the desired state. True means
* overview is open, false means it's closed.
*/
function toggleOverview( override ) {
if( typeof override === 'boolean' ) {
override ? activateOverview() : deactivateOverview();
}
else {
isOverview() ? deactivateOverview() : activateOverview();
}
}
/**
* Checks if the overview is currently active.
*
* @return {Boolean} true if the overview is active,
* false otherwise
*/
function isOverview() {
return overview;
}
/**
* Checks if the current or specified slide is vertical
* (nested within another slide).
*
* @param {HTMLElement} [slide=currentSlide] The slide to check
* orientation of
* @return {Boolean}
*/
function isVerticalSlide( slide ) {
// Prefer slide argument, otherwise use current slide
slide = slide ? slide : currentSlide;
return slide && slide.parentNode && !!slide.parentNode.nodeName.match( /section/i );
}
/**
* Handling the fullscreen functionality via the fullscreen API
*
* @see http://fullscreen.spec.whatwg.org/
* @see https://developer.mozilla.org/en-US/docs/DOM/Using_fullscreen_mode
*/
function enterFullscreen() {
var element = document.documentElement;
// Check which implementation is available
var requestMethod = element.requestFullscreen ||
element.webkitRequestFullscreen ||
element.webkitRequestFullScreen ||
element.mozRequestFullScreen ||
element.msRequestFullscreen;
if( requestMethod ) {
requestMethod.apply( element );
}
}
/**
* Enters the paused mode which fades everything on screen to
* black.
*/
function pause() {
if( config.pause ) {
var wasPaused = dom.wrapper.classList.contains( 'paused' );
cancelAutoSlide();
dom.wrapper.classList.add( 'paused' );
if( wasPaused === false ) {
dispatchEvent( 'paused' );
}
}
}
/**
* Exits from the paused mode.
*/
function resume() {
var wasPaused = dom.wrapper.classList.contains( 'paused' );
dom.wrapper.classList.remove( 'paused' );
cueAutoSlide();
if( wasPaused ) {
dispatchEvent( 'resumed' );
}
}
/**
* Toggles the paused mode on and off.
*/
function togglePause( override ) {
if( typeof override === 'boolean' ) {
override ? pause() : resume();
}
else {
isPaused() ? resume() : pause();
}
}
/**
* Checks if we are currently in the paused mode.
*
* @return {Boolean}
*/
function isPaused() {
return dom.wrapper.classList.contains( 'paused' );
}
/**
* Toggles the auto slide mode on and off.
*
* @param {Boolean} [override] Flag which sets the desired state.
* True means autoplay starts, false means it stops.
*/
function toggleAutoSlide( override ) {
if( typeof override === 'boolean' ) {
override ? resumeAutoSlide() : pauseAutoSlide();
}
else {
autoSlidePaused ? resumeAutoSlide() : pauseAutoSlide();
}
}
/**
* Checks if the auto slide mode is currently on.
*
* @return {Boolean}
*/
function isAutoSliding() {
return !!( autoSlide && !autoSlidePaused );
}
/**
* Steps from the current point in the presentation to the
* slide which matches the specified horizontal and vertical
* indices.
*
* @param {number} [h=indexh] Horizontal index of the target slide
* @param {number} [v=indexv] Vertical index of the target slide
* @param {number} [f] Index of a fragment within the
* target slide to activate
* @param {number} [o] Origin for use in multimaster environments
*/
function slide( h, v, f, o ) {
// Remember where we were at before
previousSlide = currentSlide;
// Query all horizontal slides in the deck
var horizontalSlides = dom.wrapper.querySelectorAll( HORIZONTAL_SLIDES_SELECTOR );
// Abort if there are no slides
if( horizontalSlides.length === 0 ) return;
// If no vertical index is specified and the upcoming slide is a
// stack, resume at its previous vertical index
if( v === undefined && !isOverview() ) {
v = getPreviousVerticalIndex( horizontalSlides[ h ] );
}
// If we were on a vertical stack, remember what vertical index
// it was on so we can resume at the same position when returning
if( previousSlide && previousSlide.parentNode && previousSlide.parentNode.classList.contains( 'stack' ) ) {
setPreviousVerticalIndex( previousSlide.parentNode, indexv );
}
// Remember the state before this slide
var stateBefore = state.concat();
// Reset the state array
state.length = 0;
var indexhBefore = indexh || 0,
indexvBefore = indexv || 0;
// Activate and transition to the new slide
indexh = updateSlides( HORIZONTAL_SLIDES_SELECTOR, h === undefined ? indexh : h );
indexv = updateSlides( VERTICAL_SLIDES_SELECTOR, v === undefined ? indexv : v );
// Update the visibility of slides now that the indices have changed
updateSlidesVisibility();
layout();
// Apply the new state
stateLoop: for( var i = 0, len = state.length; i < len; i++ ) {
// Check if this state existed on the previous slide. If it
// did, we will avoid adding it repeatedly
for( var j = 0; j < stateBefore.length; j++ ) {
if( stateBefore[j] === state[i] ) {
stateBefore.splice( j, 1 );
continue stateLoop;
}
}
document.documentElement.classList.add( state[i] );
// Dispatch custom event matching the state's name
dispatchEvent( state[i] );
}
// Clean up the remains of the previous state
while( stateBefore.length ) {
document.documentElement.classList.remove( stateBefore.pop() );
}
// Update the overview if it's currently active
if( isOverview() ) {
updateOverview();
}
// Find the current horizontal slide and any possible vertical slides
// within it
var currentHorizontalSlide = horizontalSlides[ indexh ],
currentVerticalSlides = currentHorizontalSlide.querySelectorAll( 'section' );
// Store references to the previous and current slides
currentSlide = currentVerticalSlides[ indexv ] || currentHorizontalSlide;
// Show fragment, if specified
if( typeof f !== 'undefined' ) {
navigateFragment( f );
}
// Dispatch an event if the slide changed
var slideChanged = ( indexh !== indexhBefore || indexv !== indexvBefore );
if( slideChanged ) {
dispatchEvent( 'slidechanged', {
'indexh': indexh,
'indexv': indexv,
'previousSlide': previousSlide,
'currentSlide': currentSlide,
'origin': o
} );
}
else {
// Ensure that the previous slide is never the same as the current
previousSlide = null;
}
// Solves an edge case where the previous slide maintains the
// 'present' class when navigating between adjacent vertical
// stacks
if( previousSlide ) {
previousSlide.classList.remove( 'present' );
previousSlide.setAttribute( 'aria-hidden', 'true' );
// Reset all slides upon navigate to home
// Issue: #285
if ( dom.wrapper.querySelector( HOME_SLIDE_SELECTOR ).classList.contains( 'present' ) ) {
// Launch async task
setTimeout( function () {
var slides = toArray( dom.wrapper.querySelectorAll( HORIZONTAL_SLIDES_SELECTOR + '.stack') ), i;
for( i in slides ) {
if( slides[i] ) {
// Reset stack
setPreviousVerticalIndex( slides[i], 0 );
}
}
}, 0 );
}
}
// Handle embedded content
if( slideChanged || !previousSlide ) {
stopEmbeddedContent( previousSlide );
startEmbeddedContent( currentSlide );
}
// Announce the current slide contents, for screen readers
dom.statusDiv.textContent = getStatusText( currentSlide );
updateControls();
updateProgress();
updateBackground();
updateParallax();
updateSlideNumber();
updateNotes();
// Update the URL hash
writeURL();
cueAutoSlide();
}
/**
* Syncs the presentation with the current DOM. Useful
* when new slides or control elements are added or when
* the configuration has changed.
*/
function sync() {
// Subscribe to input
removeEventListeners();
addEventListeners();
// Force a layout to make sure the current config is accounted for
layout();
// Reflect the current autoSlide value
autoSlide = config.autoSlide;
// Start auto-sliding if it's enabled
cueAutoSlide();
// Re-create the slide backgrounds
createBackgrounds();
// Write the current hash to the URL
writeURL();
sortAllFragments();
updateControls();
updateProgress();
updateSlideNumber();
updateSlidesVisibility();
updateBackground( true );
updateNotesVisibility();
updateNotes();
formatEmbeddedContent();
// Start or stop embedded content depending on global config
if( config.autoPlayMedia === false ) {
stopEmbeddedContent( currentSlide, { unloadIframes: false } );
}
else {
startEmbeddedContent( currentSlide );
}
if( isOverview() ) {
layoutOverview();
}
}
/**
* Resets all vertical slides so that only the first
* is visible.
*/
function resetVerticalSlides() {
var horizontalSlides = toArray( dom.wrapper.querySelectorAll( HORIZONTAL_SLIDES_SELECTOR ) );
horizontalSlides.forEach( function( horizontalSlide ) {
var verticalSlides = toArray( horizontalSlide.querySelectorAll( 'section' ) );
verticalSlides.forEach( function( verticalSlide, y ) {
if( y > 0 ) {
verticalSlide.classList.remove( 'present' );
verticalSlide.classList.remove( 'past' );
verticalSlide.classList.add( 'future' );
verticalSlide.setAttribute( 'aria-hidden', 'true' );
}
} );
} );
}
/**
* Sorts and formats all of fragments in the
* presentation.
*/
function sortAllFragments() {
var horizontalSlides = toArray( dom.wrapper.querySelectorAll( HORIZONTAL_SLIDES_SELECTOR ) );
horizontalSlides.forEach( function( horizontalSlide ) {
var verticalSlides = toArray( horizontalSlide.querySelectorAll( 'section' ) );
verticalSlides.forEach( function( verticalSlide, y ) {
sortFragments( verticalSlide.querySelectorAll( '.fragment' ) );
} );
if( verticalSlides.length === 0 ) sortFragments( horizontalSlide.querySelectorAll( '.fragment' ) );
} );
}
/**
* Randomly shuffles all slides in the deck.
*/
function shuffle() {
var slides = toArray( dom.wrapper.querySelectorAll( HORIZONTAL_SLIDES_SELECTOR ) );
slides.forEach( function( slide ) {
// Insert this slide next to another random slide. This may
// cause the slide to insert before itself but that's fine.
dom.slides.insertBefore( slide, slides[ Math.floor( Math.random() * slides.length ) ] );
} );
}
/**
* Updates one dimension of slides by showing the slide
* with the specified index.
*
* @param {string} selector A CSS selector that will fetch
* the group of slides we are working with
* @param {number} index The index of the slide that should be
* shown
*
* @return {number} The index of the slide that is now shown,
* might differ from the passed in index if it was out of
* bounds.
*/
function updateSlides( selector, index ) {
// Select all slides and convert the NodeList result to
// an array
var slides = toArray( dom.wrapper.querySelectorAll( selector ) ),
slidesLength = slides.length;
var printMode = isPrintingPDF();
if( slidesLength ) {
// Should the index loop?
if( config.loop ) {
index %= slidesLength;
if( index < 0 ) {
index = slidesLength + index;
}
}
// Enforce max and minimum index bounds
index = Math.max( Math.min( index, slidesLength - 1 ), 0 );
for( var i = 0; i < slidesLength; i++ ) {
var element = slides[i];
var reverse = config.rtl && !isVerticalSlide( element );
element.classList.remove( 'past' );
element.classList.remove( 'present' );
element.classList.remove( 'future' );
// http://www.w3.org/html/wg/drafts/html/master/editing.html#the-hidden-attribute
element.setAttribute( 'hidden', '' );
element.setAttribute( 'aria-hidden', 'true' );
// If this element contains vertical slides
if( element.querySelector( 'section' ) ) {
element.classList.add( 'stack' );
}
// If we're printing static slides, all slides are "present"
if( printMode ) {
element.classList.add( 'present' );
continue;
}
if( i < index ) {
// Any element previous to index is given the 'past' class
element.classList.add( reverse ? 'future' : 'past' );
if( config.fragments ) {
var pastFragments = toArray( element.querySelectorAll( '.fragment' ) );
// Show all fragments on prior slides
while( pastFragments.length ) {
var pastFragment = pastFragments.pop();
pastFragment.classList.add( 'visible' );
pastFragment.classList.remove( 'current-fragment' );
}
}
}
else if( i > index ) {
// Any element subsequent to index is given the 'future' class
element.classList.add( reverse ? 'past' : 'future' );
if( config.fragments ) {
var futureFragments = toArray( element.querySelectorAll( '.fragment.visible' ) );
// No fragments in future slides should be visible ahead of time
while( futureFragments.length ) {
var futureFragment = futureFragments.pop();
futureFragment.classList.remove( 'visible' );
futureFragment.classList.remove( 'current-fragment' );
}
}
}
}
// Mark the current slide as present
slides[index].classList.add( 'present' );
slides[index].removeAttribute( 'hidden' );
slides[index].removeAttribute( 'aria-hidden' );
// If this slide has a state associated with it, add it
// onto the current state of the deck
var slideState = slides[index].getAttribute( 'data-state' );
if( slideState ) {
state = state.concat( slideState.split( ' ' ) );
}
}
else {
// Since there are no slides we can't be anywhere beyond the
// zeroth index
index = 0;
}
return index;
}
/**
* Optimization method; hide all slides that are far away
* from the present slide.
*/
function updateSlidesVisibility() {
// Select all slides and convert the NodeList result to
// an array
var horizontalSlides = toArray( dom.wrapper.querySelectorAll( HORIZONTAL_SLIDES_SELECTOR ) ),
horizontalSlidesLength = horizontalSlides.length,
distanceX,
distanceY;
if( horizontalSlidesLength && typeof indexh !== 'undefined' ) {
// The number of steps away from the present slide that will
// be visible
var viewDistance = isOverview() ? 10 : config.viewDistance;
// Limit view distance on weaker devices
if( isMobileDevice ) {
viewDistance = isOverview() ? 6 : 2;
}
// All slides need to be visible when exporting to PDF
if( isPrintingPDF() ) {
viewDistance = Number.MAX_VALUE;
}
for( var x = 0; x < horizontalSlidesLength; x++ ) {
var horizontalSlide = horizontalSlides[x];
var verticalSlides = toArray( horizontalSlide.querySelectorAll( 'section' ) ),
verticalSlidesLength = verticalSlides.length;
// Determine how far away this slide is from the present
distanceX = Math.abs( ( indexh || 0 ) - x ) || 0;
// If the presentation is looped, distance should measure
// 1 between the first and last slides
if( config.loop ) {
distanceX = Math.abs( ( ( indexh || 0 ) - x ) % ( horizontalSlidesLength - viewDistance ) ) || 0;
}
// Show the horizontal slide if it's within the view distance
if( distanceX < viewDistance ) {
loadSlide( horizontalSlide );
}
else {
unloadSlide( horizontalSlide );
}
if( verticalSlidesLength ) {
var oy = getPreviousVerticalIndex( horizontalSlide );
for( var y = 0; y < verticalSlidesLength; y++ ) {
var verticalSlide = verticalSlides[y];
distanceY = x === ( indexh || 0 ) ? Math.abs( ( indexv || 0 ) - y ) : Math.abs( y - oy );
if( distanceX + distanceY < viewDistance ) {
loadSlide( verticalSlide );
}
else {
unloadSlide( verticalSlide );
}
}
}
}
// Flag if there are ANY vertical slides, anywhere in the deck
if( dom.wrapper.querySelectorAll( '.slides>section>section' ).length ) {
dom.wrapper.classList.add( 'has-vertical-slides' );
}
else {
dom.wrapper.classList.remove( 'has-vertical-slides' );
}
// Flag if there are ANY horizontal slides, anywhere in the deck
if( dom.wrapper.querySelectorAll( '.slides>section' ).length > 1 ) {
dom.wrapper.classList.add( 'has-horizontal-slides' );
}
else {
dom.wrapper.classList.remove( 'has-horizontal-slides' );
}
}
}
/**
* Pick up notes from the current slide and display them
* to the viewer.
*
* @see {@link config.showNotes}
*/
function updateNotes() {
if( config.showNotes && dom.speakerNotes && currentSlide && !isPrintingPDF() ) {
dom.speakerNotes.innerHTML = getSlideNotes() || '<span class="notes-placeholder">No notes on this slide.</span>';
}
}
/**
* Updates the visibility of the speaker notes sidebar that
* is used to share annotated slides. The notes sidebar is
* only visible if showNotes is true and there are notes on
* one or more slides in the deck.
*/
function updateNotesVisibility() {
if( config.showNotes && hasNotes() ) {
dom.wrapper.classList.add( 'show-notes' );
}
else {
dom.wrapper.classList.remove( 'show-notes' );
}
}
/**
* Checks if there are speaker notes for ANY slide in the
* presentation.
*/
function hasNotes() {
return dom.slides.querySelectorAll( '[data-notes], aside.notes' ).length > 0;
}
/**
* Updates the progress bar to reflect the current slide.
*/
function updateProgress() {
// Update progress if enabled
if( config.progress && dom.progressbar ) {
dom.progressbar.style.width = getProgress() * dom.wrapper.offsetWidth + 'px';
}
}
/**
* Updates the slide number div to reflect the current slide.
*
* The following slide number formats are available:
* "h.v": horizontal . vertical slide number (default)
* "h/v": horizontal / vertical slide number
* "c": flattened slide number
* "c/t": flattened slide number / total slides
*/
function updateSlideNumber() {
// Update slide number if enabled
if( config.slideNumber && dom.slideNumber ) {
var value = [];
var format = 'h.v';
// Check if a custom number format is available
if( typeof config.slideNumber === 'string' ) {
format = config.slideNumber;
}
switch( format ) {
case 'c':
value.push( getSlidePastCount() + 1 );
break;
case 'c/t':
value.push( getSlidePastCount() + 1, '/', getTotalSlides() );
break;
case 'h/v':
value.push( indexh + 1 );
if( isVerticalSlide() ) value.push( '/', indexv + 1 );
break;
default:
value.push( indexh + 1 );
if( isVerticalSlide() ) value.push( '.', indexv + 1 );
}
dom.slideNumber.innerHTML = formatSlideNumber( value[0], value[1], value[2] );
}
}
/**
* Applies HTML formatting to a slide number before it's
* written to the DOM.
*
* @param {number} a Current slide
* @param {string} delimiter Character to separate slide numbers
* @param {(number|*)} b Total slides
* @return {string} HTML string fragment
*/
function formatSlideNumber( a, delimiter, b ) {
if( typeof b === 'number' && !isNaN( b ) ) {
return '<span class="slide-number-a">'+ a +'</span>' +
'<span class="slide-number-delimiter">'+ delimiter +'</span>' +
'<span class="slide-number-b">'+ b +'</span>';
}
else {
return '<span class="slide-number-a">'+ a +'</span>';
}
}
/**
* Updates the state of all control/navigation arrows.
*/
function updateControls() {
var routes = availableRoutes();
var fragments = availableFragments();
// Remove the 'enabled' class from all directions
dom.controlsLeft.concat( dom.controlsRight )
.concat( dom.controlsUp )
.concat( dom.controlsDown )
.concat( dom.controlsPrev )
.concat( dom.controlsNext ).forEach( function( node ) {
node.classList.remove( 'enabled' );
node.classList.remove( 'fragmented' );
// Set 'disabled' attribute on all directions
node.setAttribute( 'disabled', 'disabled' );
} );
// Add the 'enabled' class to the available routes; remove 'disabled' attribute to enable buttons
if( routes.left ) dom.controlsLeft.forEach( function( el ) { el.classList.add( 'enabled' ); el.removeAttribute( 'disabled' ); } );
if( routes.right ) dom.controlsRight.forEach( function( el ) { el.classList.add( 'enabled' ); el.removeAttribute( 'disabled' ); } );
if( routes.up ) dom.controlsUp.forEach( function( el ) { el.classList.add( 'enabled' ); el.removeAttribute( 'disabled' ); } );
if( routes.down ) dom.controlsDown.forEach( function( el ) { el.classList.add( 'enabled' ); el.removeAttribute( 'disabled' ); } );
// Prev/next buttons
if( routes.left || routes.up ) dom.controlsPrev.forEach( function( el ) { el.classList.add( 'enabled' ); el.removeAttribute( 'disabled' ); } );
if( routes.right || routes.down ) dom.controlsNext.forEach( function( el ) { el.classList.add( 'enabled' ); el.removeAttribute( 'disabled' ); } );
// Highlight fragment directions
if( currentSlide ) {
// Always apply fragment decorator to prev/next buttons
if( fragments.prev ) dom.controlsPrev.forEach( function( el ) { el.classList.add( 'fragmented', 'enabled' ); el.removeAttribute( 'disabled' ); } );
if( fragments.next ) dom.controlsNext.forEach( function( el ) { el.classList.add( 'fragmented', 'enabled' ); el.removeAttribute( 'disabled' ); } );
// Apply fragment decorators to directional buttons based on
// what slide axis they are in
if( isVerticalSlide( currentSlide ) ) {
if( fragments.prev ) dom.controlsUp.forEach( function( el ) { el.classList.add( 'fragmented', 'enabled' ); el.removeAttribute( 'disabled' ); } );
if( fragments.next ) dom.controlsDown.forEach( function( el ) { el.classList.add( 'fragmented', 'enabled' ); el.removeAttribute( 'disabled' ); } );
}
else {
if( fragments.prev ) dom.controlsLeft.forEach( function( el ) { el.classList.add( 'fragmented', 'enabled' ); el.removeAttribute( 'disabled' ); } );
if( fragments.next ) dom.controlsRight.forEach( function( el ) { el.classList.add( 'fragmented', 'enabled' ); el.removeAttribute( 'disabled' ); } );
}
}
if( config.controlsTutorial ) {
// Highlight control arrows with an animation to ensure
// that the viewer knows how to navigate
if( !hasNavigatedDown && routes.down ) {
dom.controlsDownArrow.classList.add( 'highlight' );
}
else {
dom.controlsDownArrow.classList.remove( 'highlight' );
if( !hasNavigatedRight && routes.right && indexv === 0 ) {
dom.controlsRightArrow.classList.add( 'highlight' );
}
else {
dom.controlsRightArrow.classList.remove( 'highlight' );
}
}
}
}
/**
* Updates the background elements to reflect the current
* slide.
*
* @param {boolean} includeAll If true, the backgrounds of
* all vertical slides (not just the present) will be updated.
*/
function updateBackground( includeAll ) {
var currentBackground = null;
// Reverse past/future classes when in RTL mode
var horizontalPast = config.rtl ? 'future' : 'past',
horizontalFuture = config.rtl ? 'past' : 'future';
// Update the classes of all backgrounds to match the
// states of their slides (past/present/future)
toArray( dom.background.childNodes ).forEach( function( backgroundh, h ) {
backgroundh.classList.remove( 'past' );
backgroundh.classList.remove( 'present' );
backgroundh.classList.remove( 'future' );
if( h < indexh ) {
backgroundh.classList.add( horizontalPast );
}
else if ( h > indexh ) {
backgroundh.classList.add( horizontalFuture );
}
else {
backgroundh.classList.add( 'present' );
// Store a reference to the current background element
currentBackground = backgroundh;
}
if( includeAll || h === indexh ) {
toArray( backgroundh.querySelectorAll( '.slide-background' ) ).forEach( function( backgroundv, v ) {
backgroundv.classList.remove( 'past' );
backgroundv.classList.remove( 'present' );
backgroundv.classList.remove( 'future' );
if( v < indexv ) {
backgroundv.classList.add( 'past' );
}
else if ( v > indexv ) {
backgroundv.classList.add( 'future' );
}
else {
backgroundv.classList.add( 'present' );
// Only if this is the present horizontal and vertical slide
if( h === indexh ) currentBackground = backgroundv;
}
} );
}
} );
// Stop content inside of previous backgrounds
if( previousBackground ) {
stopEmbeddedContent( previousBackground );
}
// Start content in the current background
if( currentBackground ) {
startEmbeddedContent( currentBackground );
var backgroundImageURL = currentBackground.style.backgroundImage || '';
// Restart GIFs (doesn't work in Firefox)
if( /\.gif/i.test( backgroundImageURL ) ) {
currentBackground.style.backgroundImage = '';
window.getComputedStyle( currentBackground ).opacity;
currentBackground.style.backgroundImage = backgroundImageURL;
}
// Don't transition between identical backgrounds. This
// prevents unwanted flicker.
var previousBackgroundHash = previousBackground ? previousBackground.getAttribute( 'data-background-hash' ) : null;
var currentBackgroundHash = currentBackground.getAttribute( 'data-background-hash' );
if( currentBackgroundHash && currentBackgroundHash === previousBackgroundHash && currentBackground !== previousBackground ) {
dom.background.classList.add( 'no-transition' );
}
previousBackground = currentBackground;
}
// If there's a background brightness flag for this slide,
// bubble it to the .reveal container
if( currentSlide ) {
[ 'has-light-background', 'has-dark-background' ].forEach( function( classToBubble ) {
if( currentSlide.classList.contains( classToBubble ) ) {
dom.wrapper.classList.add( classToBubble );
}
else {
dom.wrapper.classList.remove( classToBubble );
}
} );
}
// Allow the first background to apply without transition
setTimeout( function() {
dom.background.classList.remove( 'no-transition' );
}, 1 );
}
/**
* Updates the position of the parallax background based
* on the current slide index.
*/
function updateParallax() {
if( config.parallaxBackgroundImage ) {
var horizontalSlides = dom.wrapper.querySelectorAll( HORIZONTAL_SLIDES_SELECTOR ),
verticalSlides = dom.wrapper.querySelectorAll( VERTICAL_SLIDES_SELECTOR );
var backgroundSize = dom.background.style.backgroundSize.split( ' ' ),
backgroundWidth, backgroundHeight;
if( backgroundSize.length === 1 ) {
backgroundWidth = backgroundHeight = parseInt( backgroundSize[0], 10 );
}
else {
backgroundWidth = parseInt( backgroundSize[0], 10 );
backgroundHeight = parseInt( backgroundSize[1], 10 );
}
var slideWidth = dom.background.offsetWidth,
horizontalSlideCount = horizontalSlides.length,
horizontalOffsetMultiplier,
horizontalOffset;
if( typeof config.parallaxBackgroundHorizontal === 'number' ) {
horizontalOffsetMultiplier = config.parallaxBackgroundHorizontal;
}
else {
horizontalOffsetMultiplier = horizontalSlideCount > 1 ? ( backgroundWidth - slideWidth ) / ( horizontalSlideCount-1 ) : 0;
}
horizontalOffset = horizontalOffsetMultiplier * indexh * -1;
var slideHeight = dom.background.offsetHeight,
verticalSlideCount = verticalSlides.length,
verticalOffsetMultiplier,
verticalOffset;
if( typeof config.parallaxBackgroundVertical === 'number' ) {
verticalOffsetMultiplier = config.parallaxBackgroundVertical;
}
else {
verticalOffsetMultiplier = ( backgroundHeight - slideHeight ) / ( verticalSlideCount-1 );
}
verticalOffset = verticalSlideCount > 0 ? verticalOffsetMultiplier * indexv : 0;
dom.background.style.backgroundPosition = horizontalOffset + 'px ' + -verticalOffset + 'px';
}
}
/**
* Called when the given slide is within the configured view
* distance. Shows the slide element and loads any content
* that is set to load lazily (data-src).
*
* @param {HTMLElement} slide Slide to show
*/
function loadSlide( slide, options ) {
options = options || {};
// Show the slide element
slide.style.display = config.display;
// Media elements with data-src attributes
toArray( slide.querySelectorAll( 'img[data-src], video[data-src], audio[data-src]' ) ).forEach( function( element ) {
element.setAttribute( 'src', element.getAttribute( 'data-src' ) );
element.setAttribute( 'data-lazy-loaded', '' );
element.removeAttribute( 'data-src' );
} );
// Media elements with <source> children
toArray( slide.querySelectorAll( 'video, audio' ) ).forEach( function( media ) {
var sources = 0;
toArray( media.querySelectorAll( 'source[data-src]' ) ).forEach( function( source ) {
source.setAttribute( 'src', source.getAttribute( 'data-src' ) );
source.removeAttribute( 'data-src' );
source.setAttribute( 'data-lazy-loaded', '' );
sources += 1;
} );
// If we rewrote sources for this video/audio element, we need
// to manually tell it to load from its new origin
if( sources > 0 ) {
media.load();
}
} );
// Show the corresponding background element
var indices = getIndices( slide );
var background = getSlideBackground( indices.h, indices.v );
if( background ) {
background.style.display = 'block';
// If the background contains media, load it
if( background.hasAttribute( 'data-loaded' ) === false ) {
background.setAttribute( 'data-loaded', 'true' );
var backgroundImage = slide.getAttribute( 'data-background-image' ),
backgroundVideo = slide.getAttribute( 'data-background-video' ),
backgroundVideoLoop = slide.hasAttribute( 'data-background-video-loop' ),
backgroundVideoMuted = slide.hasAttribute( 'data-background-video-muted' ),
backgroundIframe = slide.getAttribute( 'data-background-iframe' );
// Images
if( backgroundImage ) {
background.style.backgroundImage = 'url('+ backgroundImage +')';
}
// Videos
else if ( backgroundVideo && !isSpeakerNotes() ) {
var video = document.createElement( 'video' );
if( backgroundVideoLoop ) {
video.setAttribute( 'loop', '' );
}
if( backgroundVideoMuted ) {
video.muted = true;
}
// Inline video playback works (at least in Mobile Safari) as
// long as the video is muted and the `playsinline` attribute is
// present
if( isMobileDevice ) {
video.muted = true;
video.autoplay = true;
video.setAttribute( 'playsinline', '' );
}
// Support comma separated lists of video sources
backgroundVideo.split( ',' ).forEach( function( source ) {
video.innerHTML += '<source src="'+ source +'">';
} );
background.appendChild( video );
}
// Iframes
else if( backgroundIframe && options.excludeIframes !== true ) {
var iframe = document.createElement( 'iframe' );
iframe.setAttribute( 'allowfullscreen', '' );
iframe.setAttribute( 'mozallowfullscreen', '' );
iframe.setAttribute( 'webkitallowfullscreen', '' );
// Only load autoplaying content when the slide is shown to
// avoid having it play in the background
if( /autoplay=(1|true|yes)/gi.test( backgroundIframe ) ) {
iframe.setAttribute( 'data-src', backgroundIframe );
}
else {
iframe.setAttribute( 'src', backgroundIframe );
}
iframe.style.width = '100%';
iframe.style.height = '100%';
iframe.style.maxHeight = '100%';
iframe.style.maxWidth = '100%';
background.appendChild( iframe );
}
}
}
}
/**
* Unloads and hides the given slide. This is called when the
* slide is moved outside of the configured view distance.
*
* @param {HTMLElement} slide
*/
function unloadSlide( slide ) {
// Hide the slide element
slide.style.display = 'none';
// Hide the corresponding background element
var indices = getIndices( slide );
var background = getSlideBackground( indices.h, indices.v );
if( background ) {
background.style.display = 'none';
}
// Reset lazy-loaded media elements with src attributes
toArray( slide.querySelectorAll( 'video[data-lazy-loaded][src], audio[data-lazy-loaded][src]' ) ).forEach( function( element ) {
element.setAttribute( 'data-src', element.getAttribute( 'src' ) );
element.removeAttribute( 'src' );
} );
// Reset lazy-loaded media elements with <source> children
toArray( slide.querySelectorAll( 'video[data-lazy-loaded] source[src], audio source[src]' ) ).forEach( function( source ) {
source.setAttribute( 'data-src', source.getAttribute( 'src' ) );
source.removeAttribute( 'src' );
} );
}
/**
* Determine what available routes there are for navigation.
*
* @return {{left: boolean, right: boolean, up: boolean, down: boolean}}
*/
function availableRoutes() {
var horizontalSlides = dom.wrapper.querySelectorAll( HORIZONTAL_SLIDES_SELECTOR ),
verticalSlides = dom.wrapper.querySelectorAll( VERTICAL_SLIDES_SELECTOR );
var routes = {
left: indexh > 0 || config.loop,
right: indexh < horizontalSlides.length - 1 || config.loop,
up: indexv > 0,
down: indexv < verticalSlides.length - 1
};
// reverse horizontal controls for rtl
if( config.rtl ) {
var left = routes.left;
routes.left = routes.right;
routes.right = left;
}
return routes;
}
/**
* Returns an object describing the available fragment
* directions.
*
* @return {{prev: boolean, next: boolean}}
*/
function availableFragments() {
if( currentSlide && config.fragments ) {
var fragments = currentSlide.querySelectorAll( '.fragment' );
var hiddenFragments = currentSlide.querySelectorAll( '.fragment:not(.visible)' );
return {
prev: fragments.length - hiddenFragments.length > 0,
next: !!hiddenFragments.length
};
}
else {
return { prev: false, next: false };
}
}
/**
* Enforces origin-specific format rules for embedded media.
*/
function formatEmbeddedContent() {
var _appendParamToIframeSource = function( sourceAttribute, sourceURL, param ) {
toArray( dom.slides.querySelectorAll( 'iframe['+ sourceAttribute +'*="'+ sourceURL +'"]' ) ).forEach( function( el ) {
var src = el.getAttribute( sourceAttribute );
if( src && src.indexOf( param ) === -1 ) {
el.setAttribute( sourceAttribute, src + ( !/\?/.test( src ) ? '?' : '&' ) + param );
}
});
};
// YouTube frames must include "?enablejsapi=1"
_appendParamToIframeSource( 'src', 'youtube.com/embed/', 'enablejsapi=1' );
_appendParamToIframeSource( 'data-src', 'youtube.com/embed/', 'enablejsapi=1' );
// Vimeo frames must include "?api=1"
_appendParamToIframeSource( 'src', 'player.vimeo.com/', 'api=1' );
_appendParamToIframeSource( 'data-src', 'player.vimeo.com/', 'api=1' );
// Always show media controls on mobile devices
if( isMobileDevice ) {
toArray( dom.slides.querySelectorAll( 'video, audio' ) ).forEach( function( el ) {
el.controls = true;
} );
}
}
/**
* Start playback of any embedded content inside of
* the given element.
*
* @param {HTMLElement} element
*/
function startEmbeddedContent( element ) {
if( element && !isSpeakerNotes() ) {
// Restart GIFs
toArray( element.querySelectorAll( 'img[src$=".gif"]' ) ).forEach( function( el ) {
// Setting the same unchanged source like this was confirmed
// to work in Chrome, FF & Safari
el.setAttribute( 'src', el.getAttribute( 'src' ) );
} );
// HTML5 media elements
toArray( element.querySelectorAll( 'video, audio' ) ).forEach( function( el ) {
if( closestParent( el, '.fragment' ) && !closestParent( el, '.fragment.visible' ) ) {
return;
}
// Prefer an explicit global autoplay setting
var autoplay = config.autoPlayMedia;
// If no global setting is available, fall back on the element's
// own autoplay setting
if( typeof autoplay !== 'boolean' ) {
autoplay = el.hasAttribute( 'data-autoplay' ) || !!closestParent( el, '.slide-background' );
}
if( autoplay && typeof el.play === 'function' ) {
if( el.readyState > 1 ) {
startEmbeddedMedia( { target: el } );
}
else {
el.removeEventListener( 'loadeddata', startEmbeddedMedia ); // remove first to avoid dupes
el.addEventListener( 'loadeddata', startEmbeddedMedia );
}
}
} );
// Normal iframes
toArray( element.querySelectorAll( 'iframe[src]' ) ).forEach( function( el ) {
if( closestParent( el, '.fragment' ) && !closestParent( el, '.fragment.visible' ) ) {
return;
}
startEmbeddedIframe( { target: el } );
} );
// Lazy loading iframes
toArray( element.querySelectorAll( 'iframe[data-src]' ) ).forEach( function( el ) {
if( closestParent( el, '.fragment' ) && !closestParent( el, '.fragment.visible' ) ) {
return;
}
if( el.getAttribute( 'src' ) !== el.getAttribute( 'data-src' ) ) {
el.removeEventListener( 'load', startEmbeddedIframe ); // remove first to avoid dupes
el.addEventListener( 'load', startEmbeddedIframe );
el.setAttribute( 'src', el.getAttribute( 'data-src' ) );
}
} );
}
}
/**
* Starts playing an embedded video/audio element after
* it has finished loading.
*
* @param {object} event
*/
function startEmbeddedMedia( event ) {
var isAttachedToDOM = !!closestParent( event.target, 'html' ),
isVisible = !!closestParent( event.target, '.present' );
if( isAttachedToDOM && isVisible ) {
event.target.currentTime = 0;
event.target.play();
}
event.target.removeEventListener( 'loadeddata', startEmbeddedMedia );
}
/**
* "Starts" the content of an embedded iframe using the
* postMessage API.
*
* @param {object} event
*/
function startEmbeddedIframe( event ) {
var iframe = event.target;
if( iframe && iframe.contentWindow ) {
var isAttachedToDOM = !!closestParent( event.target, 'html' ),
isVisible = !!closestParent( event.target, '.present' );
if( isAttachedToDOM && isVisible ) {
// Prefer an explicit global autoplay setting
var autoplay = config.autoPlayMedia;
// If no global setting is available, fall back on the element's
// own autoplay setting
if( typeof autoplay !== 'boolean' ) {
autoplay = iframe.hasAttribute( 'data-autoplay' ) || !!closestParent( iframe, '.slide-background' );
}
// YouTube postMessage API
if( /youtube\.com\/embed\//.test( iframe.getAttribute( 'src' ) ) && autoplay ) {
iframe.contentWindow.postMessage( '{"event":"command","func":"playVideo","args":""}', '*' );
}
// Vimeo postMessage API
else if( /player\.vimeo\.com\//.test( iframe.getAttribute( 'src' ) ) && autoplay ) {
iframe.contentWindow.postMessage( '{"method":"play"}', '*' );
}
// Generic postMessage API
else {
iframe.contentWindow.postMessage( 'slide:start', '*' );
}
}
}
}
/**
* Stop playback of any embedded content inside of
* the targeted slide.
*
* @param {HTMLElement} element
*/
function stopEmbeddedContent( element, options ) {
options = extend( {
// Defaults
unloadIframes: true
}, options || {} );
if( element && element.parentNode ) {
// HTML5 media elements
toArray( element.querySelectorAll( 'video, audio' ) ).forEach( function( el ) {
if( !el.hasAttribute( 'data-ignore' ) && typeof el.pause === 'function' ) {
el.setAttribute('data-paused-by-reveal', '');
el.pause();
}
} );
// Generic postMessage API for non-lazy loaded iframes
toArray( element.querySelectorAll( 'iframe' ) ).forEach( function( el ) {
if( el.contentWindow ) el.contentWindow.postMessage( 'slide:stop', '*' );
el.removeEventListener( 'load', startEmbeddedIframe );
});
// YouTube postMessage API
toArray( element.querySelectorAll( 'iframe[src*="youtube.com/embed/"]' ) ).forEach( function( el ) {
if( !el.hasAttribute( 'data-ignore' ) && el.contentWindow && typeof el.contentWindow.postMessage === 'function' ) {
el.contentWindow.postMessage( '{"event":"command","func":"pauseVideo","args":""}', '*' );
}
});
// Vimeo postMessage API
toArray( element.querySelectorAll( 'iframe[src*="player.vimeo.com/"]' ) ).forEach( function( el ) {
if( !el.hasAttribute( 'data-ignore' ) && el.contentWindow && typeof el.contentWindow.postMessage === 'function' ) {
el.contentWindow.postMessage( '{"method":"pause"}', '*' );
}
});
if( options.unloadIframes === true ) {
// Unload lazy-loaded iframes
toArray( element.querySelectorAll( 'iframe[data-src]' ) ).forEach( function( el ) {
// Only removing the src doesn't actually unload the frame
// in all browsers (Firefox) so we set it to blank first
el.setAttribute( 'src', 'about:blank' );
el.removeAttribute( 'src' );
} );
}
}
}
/**
* Returns the number of past slides. This can be used as a global
* flattened index for slides.
*
* @return {number} Past slide count
*/
function getSlidePastCount() {
var horizontalSlides = toArray( dom.wrapper.querySelectorAll( HORIZONTAL_SLIDES_SELECTOR ) );
// The number of past slides
var pastCount = 0;
// Step through all slides and count the past ones
mainLoop: for( var i = 0; i < horizontalSlides.length; i++ ) {
var horizontalSlide = horizontalSlides[i];
var verticalSlides = toArray( horizontalSlide.querySelectorAll( 'section' ) );
for( var j = 0; j < verticalSlides.length; j++ ) {
// Stop as soon as we arrive at the present
if( verticalSlides[j].classList.contains( 'present' ) ) {
break mainLoop;
}
pastCount++;
}
// Stop as soon as we arrive at the present
if( horizontalSlide.classList.contains( 'present' ) ) {
break;
}
// Don't count the wrapping section for vertical slides
if( horizontalSlide.classList.contains( 'stack' ) === false ) {
pastCount++;
}
}
return pastCount;
}
/**
* Returns a value ranging from 0-1 that represents
* how far into the presentation we have navigated.
*
* @return {number}
*/
function getProgress() {
// The number of past and total slides
var totalCount = getTotalSlides();
var pastCount = getSlidePastCount();
if( currentSlide ) {
var allFragments = currentSlide.querySelectorAll( '.fragment' );
// If there are fragments in the current slide those should be
// accounted for in the progress.
if( allFragments.length > 0 ) {
var visibleFragments = currentSlide.querySelectorAll( '.fragment.visible' );
// This value represents how big a portion of the slide progress
// that is made up by its fragments (0-1)
var fragmentWeight = 0.9;
// Add fragment progress to the past slide count
pastCount += ( visibleFragments.length / allFragments.length ) * fragmentWeight;
}
}
return pastCount / ( totalCount - 1 );
}
/**
* Checks if this presentation is running inside of the
* speaker notes window.
*
* @return {boolean}
*/
function isSpeakerNotes() {
return !!window.location.search.match( /receiver/gi );
}
/**
* Reads the current URL (hash) and navigates accordingly.
*/
function readURL() {
var hash = window.location.hash;
// Attempt to parse the hash as either an index or name
var bits = hash.slice( 2 ).split( '/' ),
name = hash.replace( /#|\//gi, '' );
// If the first bit is invalid and there is a name we can
// assume that this is a named link
if( isNaN( parseInt( bits[0], 10 ) ) && name.length ) {
var element;
// Ensure the named link is a valid HTML ID attribute
if( /^[a-zA-Z][\w:.-]*$/.test( name ) ) {
// Find the slide with the specified ID
element = document.getElementById( name );
}
if( element ) {
// Find the position of the named slide and navigate to it
var indices = Reveal.getIndices( element );
slide( indices.h, indices.v );
}
// If the slide doesn't exist, navigate to the current slide
else {
slide( indexh || 0, indexv || 0 );
}
}
else {
// Read the index components of the hash
var h = parseInt( bits[0], 10 ) || 0,
v = parseInt( bits[1], 10 ) || 0;
if( h !== indexh || v !== indexv ) {
slide( h, v );
}
}
}
/**
* Updates the page URL (hash) to reflect the current
* state.
*
* @param {number} delay The time in ms to wait before
* writing the hash
*/
function writeURL( delay ) {
if( config.history ) {
// Make sure there's never more than one timeout running
clearTimeout( writeURLTimeout );
// If a delay is specified, timeout this call
if( typeof delay === 'number' ) {
writeURLTimeout = setTimeout( writeURL, delay );
}
else if( currentSlide ) {
var url = '/';
// Attempt to create a named link based on the slide's ID
var id = currentSlide.getAttribute( 'id' );
if( id ) {
id = id.replace( /[^a-zA-Z0-9\-\_\:\.]/g, '' );
}
// If the current slide has an ID, use that as a named link
if( typeof id === 'string' && id.length ) {
url = '/' + id;
}
// Otherwise use the /h/v index
else {
if( indexh > 0 || indexv > 0 ) url += indexh;
if( indexv > 0 ) url += '/' + indexv;
}
window.location.hash = url;
}
}
}
/**
* Retrieves the h/v location and fragment of the current,
* or specified, slide.
*
* @param {HTMLElement} [slide] If specified, the returned
* index will be for this slide rather than the currently
* active one
*
* @return {{h: number, v: number, f: number}}
*/
function getIndices( slide ) {
// By default, return the current indices
var h = indexh,
v = indexv,
f;
// If a slide is specified, return the indices of that slide
if( slide ) {
var isVertical = isVerticalSlide( slide );
var slideh = isVertical ? slide.parentNode : slide;
// Select all horizontal slides
var horizontalSlides = toArray( dom.wrapper.querySelectorAll( HORIZONTAL_SLIDES_SELECTOR ) );
// Now that we know which the horizontal slide is, get its index
h = Math.max( horizontalSlides.indexOf( slideh ), 0 );
// Assume we're not vertical
v = undefined;
// If this is a vertical slide, grab the vertical index
if( isVertical ) {
v = Math.max( toArray( slide.parentNode.querySelectorAll( 'section' ) ).indexOf( slide ), 0 );
}
}
if( !slide && currentSlide ) {
var hasFragments = currentSlide.querySelectorAll( '.fragment' ).length > 0;
if( hasFragments ) {
var currentFragment = currentSlide.querySelector( '.current-fragment' );
if( currentFragment && currentFragment.hasAttribute( 'data-fragment-index' ) ) {
f = parseInt( currentFragment.getAttribute( 'data-fragment-index' ), 10 );
}
else {
f = currentSlide.querySelectorAll( '.fragment.visible' ).length - 1;
}
}
}
return { h: h, v: v, f: f };
}
/**
* Retrieves all slides in this presentation.
*/
function getSlides() {
return toArray( dom.wrapper.querySelectorAll( SLIDES_SELECTOR + ':not(.stack)' ));
}
/**
* Retrieves the total number of slides in this presentation.
*
* @return {number}
*/
function getTotalSlides() {
return getSlides().length;
}
/**
* Returns the slide element matching the specified index.
*
* @return {HTMLElement}
*/
function getSlide( x, y ) {
var horizontalSlide = dom.wrapper.querySelectorAll( HORIZONTAL_SLIDES_SELECTOR )[ x ];
var verticalSlides = horizontalSlide && horizontalSlide.querySelectorAll( 'section' );
if( verticalSlides && verticalSlides.length && typeof y === 'number' ) {
return verticalSlides ? verticalSlides[ y ] : undefined;
}
return horizontalSlide;
}
/**
* Returns the background element for the given slide.
* All slides, even the ones with no background properties
* defined, have a background element so as long as the
* index is valid an element will be returned.
*
* @param {number} x Horizontal background index
* @param {number} y Vertical background index
* @return {(HTMLElement[]|*)}
*/
function getSlideBackground( x, y ) {
var slide = getSlide( x, y );
if( slide ) {
return slide.slideBackgroundElement;
}
return undefined;
}
/**
* Retrieves the speaker notes from a slide. Notes can be
* defined in two ways:
* 1. As a data-notes attribute on the slide <section>
* 2. As an <aside class="notes"> inside of the slide
*
* @param {HTMLElement} [slide=currentSlide]
* @return {(string|null)}
*/
function getSlideNotes( slide ) {
// Default to the current slide
slide = slide || currentSlide;
// Notes can be specified via the data-notes attribute...
if( slide.hasAttribute( 'data-notes' ) ) {
return slide.getAttribute( 'data-notes' );
}
// ... or using an <aside class="notes"> element
var notesElement = slide.querySelector( 'aside.notes' );
if( notesElement ) {
return notesElement.innerHTML;
}
return null;
}
/**
* Retrieves the current state of the presentation as
* an object. This state can then be restored at any
* time.
*
* @return {{indexh: number, indexv: number, indexf: number, paused: boolean, overview: boolean}}
*/
function getState() {
var indices = getIndices();
return {
indexh: indices.h,
indexv: indices.v,
indexf: indices.f,
paused: isPaused(),
overview: isOverview()
};
}
/**
* Restores the presentation to the given state.
*
* @param {object} state As generated by getState()
* @see {@link getState} generates the parameter `state`
*/
function setState( state ) {
if( typeof state === 'object' ) {
slide( deserialize( state.indexh ), deserialize( state.indexv ), deserialize( state.indexf ) );
var pausedFlag = deserialize( state.paused ),
overviewFlag = deserialize( state.overview );
if( typeof pausedFlag === 'boolean' && pausedFlag !== isPaused() ) {
togglePause( pausedFlag );
}
if( typeof overviewFlag === 'boolean' && overviewFlag !== isOverview() ) {
toggleOverview( overviewFlag );
}
}
}
/**
* Return a sorted fragments list, ordered by an increasing
* "data-fragment-index" attribute.
*
* Fragments will be revealed in the order that they are returned by
* this function, so you can use the index attributes to control the
* order of fragment appearance.
*
* To maintain a sensible default fragment order, fragments are presumed
* to be passed in document order. This function adds a "fragment-index"
* attribute to each node if such an attribute is not already present,
* and sets that attribute to an integer value which is the position of
* the fragment within the fragments list.
*
* @param {object[]|*} fragments
* @return {object[]} sorted Sorted array of fragments
*/
function sortFragments( fragments ) {
fragments = toArray( fragments );
var ordered = [],
unordered = [],
sorted = [];
// Group ordered and unordered elements
fragments.forEach( function( fragment, i ) {
if( fragment.hasAttribute( 'data-fragment-index' ) ) {
var index = parseInt( fragment.getAttribute( 'data-fragment-index' ), 10 );
if( !ordered[index] ) {
ordered[index] = [];
}
ordered[index].push( fragment );
}
else {
unordered.push( [ fragment ] );
}
} );
// Append fragments without explicit indices in their
// DOM order
ordered = ordered.concat( unordered );
// Manually count the index up per group to ensure there
// are no gaps
var index = 0;
// Push all fragments in their sorted order to an array,
// this flattens the groups
ordered.forEach( function( group ) {
group.forEach( function( fragment ) {
sorted.push( fragment );
fragment.setAttribute( 'data-fragment-index', index );
} );
index ++;
} );
return sorted;
}
/**
* Navigate to the specified slide fragment.
*
* @param {?number} index The index of the fragment that
* should be shown, -1 means all are invisible
* @param {number} offset Integer offset to apply to the
* fragment index
*
* @return {boolean} true if a change was made in any
* fragments visibility as part of this call
*/
function navigateFragment( index, offset ) {
if( currentSlide && config.fragments ) {
var fragments = sortFragments( currentSlide.querySelectorAll( '.fragment' ) );
if( fragments.length ) {
// If no index is specified, find the current
if( typeof index !== 'number' ) {
var lastVisibleFragment = sortFragments( currentSlide.querySelectorAll( '.fragment.visible' ) ).pop();
if( lastVisibleFragment ) {
index = parseInt( lastVisibleFragment.getAttribute( 'data-fragment-index' ) || 0, 10 );
}
else {
index = -1;
}
}
// If an offset is specified, apply it to the index
if( typeof offset === 'number' ) {
index += offset;
}
var fragmentsShown = [],
fragmentsHidden = [];
toArray( fragments ).forEach( function( element, i ) {
if( element.hasAttribute( 'data-fragment-index' ) ) {
i = parseInt( element.getAttribute( 'data-fragment-index' ), 10 );
}
// Visible fragments
if( i <= index ) {
if( !element.classList.contains( 'visible' ) ) fragmentsShown.push( element );
element.classList.add( 'visible' );
element.classList.remove( 'current-fragment' );
// Announce the fragments one by one to the Screen Reader
dom.statusDiv.textContent = getStatusText( element );
if( i === index ) {
element.classList.add( 'current-fragment' );
startEmbeddedContent( element );
}
}
// Hidden fragments
else {
if( element.classList.contains( 'visible' ) ) fragmentsHidden.push( element );
element.classList.remove( 'visible' );
element.classList.remove( 'current-fragment' );
}
} );
if( fragmentsHidden.length ) {
dispatchEvent( 'fragmenthidden', { fragment: fragmentsHidden[0], fragments: fragmentsHidden } );
}
if( fragmentsShown.length ) {
dispatchEvent( 'fragmentshown', { fragment: fragmentsShown[0], fragments: fragmentsShown } );
}
updateControls();
updateProgress();
return !!( fragmentsShown.length || fragmentsHidden.length );
}
}
return false;
}
/**
* Navigate to the next slide fragment.
*
* @return {boolean} true if there was a next fragment,
* false otherwise
*/
function nextFragment() {
return navigateFragment( null, 1 );
}
/**
* Navigate to the previous slide fragment.
*
* @return {boolean} true if there was a previous fragment,
* false otherwise
*/
function previousFragment() {
return navigateFragment( null, -1 );
}
/**
* Cues a new automated slide if enabled in the config.
*/
function cueAutoSlide() {
cancelAutoSlide();
if( currentSlide && config.autoSlide !== false ) {
var fragment = currentSlide.querySelector( '.current-fragment' );
// When the slide first appears there is no "current" fragment so
// we look for a data-autoslide timing on the first fragment
if( !fragment ) fragment = currentSlide.querySelector( '.fragment' );
var fragmentAutoSlide = fragment ? fragment.getAttribute( 'data-autoslide' ) : null;
var parentAutoSlide = currentSlide.parentNode ? currentSlide.parentNode.getAttribute( 'data-autoslide' ) : null;
var slideAutoSlide = currentSlide.getAttribute( 'data-autoslide' );
// Pick value in the following priority order:
// 1. Current fragment's data-autoslide
// 2. Current slide's data-autoslide
// 3. Parent slide's data-autoslide
// 4. Global autoSlide setting
if( fragmentAutoSlide ) {
autoSlide = parseInt( fragmentAutoSlide, 10 );
}
else if( slideAutoSlide ) {
autoSlide = parseInt( slideAutoSlide, 10 );
}
else if( parentAutoSlide ) {
autoSlide = parseInt( parentAutoSlide, 10 );
}
else {
autoSlide = config.autoSlide;
}
// If there are media elements with data-autoplay,
// automatically set the autoSlide duration to the
// length of that media. Not applicable if the slide
// is divided up into fragments.
// playbackRate is accounted for in the duration.
if( currentSlide.querySelectorAll( '.fragment' ).length === 0 ) {
toArray( currentSlide.querySelectorAll( 'video, audio' ) ).forEach( function( el ) {
if( el.hasAttribute( 'data-autoplay' ) ) {
if( autoSlide && (el.duration * 1000 / el.playbackRate ) > autoSlide ) {
autoSlide = ( el.duration * 1000 / el.playbackRate ) + 1000;
}
}
} );
}
// Cue the next auto-slide if:
// - There is an autoSlide value
// - Auto-sliding isn't paused by the user
// - The presentation isn't paused
// - The overview isn't active
// - The presentation isn't over
if( autoSlide && !autoSlidePaused && !isPaused() && !isOverview() && ( !Reveal.isLastSlide() || availableFragments().next || config.loop === true ) ) {
autoSlideTimeout = setTimeout( function() {
typeof config.autoSlideMethod === 'function' ? config.autoSlideMethod() : navigateNext();
cueAutoSlide();
}, autoSlide );
autoSlideStartTime = Date.now();
}
if( autoSlidePlayer ) {
autoSlidePlayer.setPlaying( autoSlideTimeout !== -1 );
}
}
}
/**
* Cancels any ongoing request to auto-slide.
*/
function cancelAutoSlide() {
clearTimeout( autoSlideTimeout );
autoSlideTimeout = -1;
}
function pauseAutoSlide() {
if( autoSlide && !autoSlidePaused ) {
autoSlidePaused = true;
dispatchEvent( 'autoslidepaused' );
clearTimeout( autoSlideTimeout );
if( autoSlidePlayer ) {
autoSlidePlayer.setPlaying( false );
}
}
}
function resumeAutoSlide() {
if( autoSlide && autoSlidePaused ) {
autoSlidePaused = false;
dispatchEvent( 'autoslideresumed' );
cueAutoSlide();
}
}
function navigateLeft() {
// Reverse for RTL
if( config.rtl ) {
if( ( isOverview() || nextFragment() === false ) && availableRoutes().left ) {
slide( indexh + 1 );
}
}
// Normal navigation
else if( ( isOverview() || previousFragment() === false ) && availableRoutes().left ) {
slide( indexh - 1 );
}
}
function navigateRight() {
hasNavigatedRight = true;
// Reverse for RTL
if( config.rtl ) {
if( ( isOverview() || previousFragment() === false ) && availableRoutes().right ) {
slide( indexh - 1 );
}
}
// Normal navigation
else if( ( isOverview() || nextFragment() === false ) && availableRoutes().right ) {
slide( indexh + 1 );
}
}
function navigateUp() {
// Prioritize hiding fragments
if( ( isOverview() || previousFragment() === false ) && availableRoutes().up ) {
slide( indexh, indexv - 1 );
}
}
function navigateDown() {
hasNavigatedDown = true;
// Prioritize revealing fragments
if( ( isOverview() || nextFragment() === false ) && availableRoutes().down ) {
slide( indexh, indexv + 1 );
}
}
/**
* Navigates backwards, prioritized in the following order:
* 1) Previous fragment
* 2) Previous vertical slide
* 3) Previous horizontal slide
*/
function navigatePrev() {
// Prioritize revealing fragments
if( previousFragment() === false ) {
if( availableRoutes().up ) {
navigateUp();
}
else {
// Fetch the previous horizontal slide, if there is one
var previousSlide;
if( config.rtl ) {
previousSlide = toArray( dom.wrapper.querySelectorAll( HORIZONTAL_SLIDES_SELECTOR + '.future' ) ).pop();
}
else {
previousSlide = toArray( dom.wrapper.querySelectorAll( HORIZONTAL_SLIDES_SELECTOR + '.past' ) ).pop();
}
if( previousSlide ) {
var v = ( previousSlide.querySelectorAll( 'section' ).length - 1 ) || undefined;
var h = indexh - 1;
slide( h, v );
}
}
}
}
/**
* The reverse of #navigatePrev().
*/
function navigateNext() {
hasNavigatedRight = true;
hasNavigatedDown = true;
// Prioritize revealing fragments
if( nextFragment() === false ) {
if( availableRoutes().down ) {
navigateDown();
}
else if( config.rtl ) {
navigateLeft();
}
else {
navigateRight();
}
}
}
/**
* Checks if the target element prevents the triggering of
* swipe navigation.
*/
function isSwipePrevented( target ) {
while( target && typeof target.hasAttribute === 'function' ) {
if( target.hasAttribute( 'data-prevent-swipe' ) ) return true;
target = target.parentNode;
}
return false;
}
// --------------------------------------------------------------------//
// ----------------------------- EVENTS -------------------------------//
// --------------------------------------------------------------------//
/**
* Called by all event handlers that are based on user
* input.
*
* @param {object} [event]
*/
function onUserInput( event ) {
if( config.autoSlideStoppable ) {
pauseAutoSlide();
}
}
/**
* Handler for the document level 'keypress' event.
*
* @param {object} event
*/
function onDocumentKeyPress( event ) {
// Check if the pressed key is question mark
if( event.shiftKey && event.charCode === 63 ) {
toggleHelp();
}
}
/**
* Handler for the document level 'keydown' event.
*
* @param {object} event
*/
function onDocumentKeyDown( event ) {
// If there's a condition specified and it returns false,
// ignore this event
if( typeof config.keyboardCondition === 'function' && config.keyboardCondition() === false ) {
return true;
}
// Remember if auto-sliding was paused so we can toggle it
var autoSlideWasPaused = autoSlidePaused;
onUserInput( event );
// Check if there's a focused element that could be using
// the keyboard
var activeElementIsCE = document.activeElement && document.activeElement.contentEditable !== 'inherit';
var activeElementIsInput = document.activeElement && document.activeElement.tagName && /input|textarea/i.test( document.activeElement.tagName );
var activeElementIsNotes = document.activeElement && document.activeElement.className && /speaker-notes/i.test( document.activeElement.className);
// Disregard the event if there's a focused element or a
// keyboard modifier key is present
if( activeElementIsCE || activeElementIsInput || activeElementIsNotes || (event.shiftKey && event.keyCode !== 32) || event.altKey || event.ctrlKey || event.metaKey ) return;
// While paused only allow resume keyboard events; 'b', 'v', '.'
var resumeKeyCodes = [66,86,190,191];
var key;
// Custom key bindings for togglePause should be able to resume
if( typeof config.keyboard === 'object' ) {
for( key in config.keyboard ) {
if( config.keyboard[key] === 'togglePause' ) {
resumeKeyCodes.push( parseInt( key, 10 ) );
}
}
}
if( isPaused() && resumeKeyCodes.indexOf( event.keyCode ) === -1 ) {
return false;
}
var triggered = false;
// 1. User defined key bindings
if( typeof config.keyboard === 'object' ) {
for( key in config.keyboard ) {
// Check if this binding matches the pressed key
if( parseInt( key, 10 ) === event.keyCode ) {
var value = config.keyboard[ key ];
// Callback function
if( typeof value === 'function' ) {
value.apply( null, [ event ] );
}
// String shortcuts to reveal.js API
else if( typeof value === 'string' && typeof Reveal[ value ] === 'function' ) {
Reveal[ value ].call();
}
triggered = true;
}
}
}
// 2. System defined key bindings
if( triggered === false ) {
// Assume true and try to prove false
triggered = true;
switch( event.keyCode ) {
// p, page up
case 80: case 33: navigatePrev(); break;
// n, page down
case 78: case 34: navigateNext(); break;
// h, left
case 72: case 37: navigateLeft(); break;
// l, right
case 76: case 39: navigateRight(); break;
// k, up
case 75: case 38: navigateUp(); break;
// j, down
case 74: case 40: navigateDown(); break;
// home
case 36: slide( 0 ); break;
// end
case 35: slide( Number.MAX_VALUE ); break;
// space
case 32: isOverview() ? deactivateOverview() : event.shiftKey ? navigatePrev() : navigateNext(); break;
// return
case 13: isOverview() ? deactivateOverview() : triggered = false; break;
// two-spot, semicolon, b, v, period, Logitech presenter tools "black screen" button
case 58: case 59: case 66: case 86: case 190: case 191: togglePause(); break;
// f
case 70: enterFullscreen(); break;
// a
case 65: if ( config.autoSlideStoppable ) toggleAutoSlide( autoSlideWasPaused ); break;
default:
triggered = false;
}
}
// If the input resulted in a triggered action we should prevent
// the browsers default behavior
if( triggered ) {
event.preventDefault && event.preventDefault();
}
// ESC or O key
else if ( ( event.keyCode === 27 || event.keyCode === 79 ) && features.transforms3d ) {
if( dom.overlay ) {
closeOverlay();
}
else {
toggleOverview();
}
event.preventDefault && event.preventDefault();
}
// If auto-sliding is enabled we need to cue up
// another timeout
cueAutoSlide();
}
/**
* Handler for the 'touchstart' event, enables support for
* swipe and pinch gestures.
*
* @param {object} event
*/
function onTouchStart( event ) {
if( isSwipePrevented( event.target ) ) return true;
touch.startX = event.touches[0].clientX;
touch.startY = event.touches[0].clientY;
touch.startCount = event.touches.length;
// If there's two touches we need to memorize the distance
// between those two points to detect pinching
if( event.touches.length === 2 && config.overview ) {
touch.startSpan = distanceBetween( {
x: event.touches[1].clientX,
y: event.touches[1].clientY
}, {
x: touch.startX,
y: touch.startY
} );
}
}
/**
* Handler for the 'touchmove' event.
*
* @param {object} event
*/
function onTouchMove( event ) {
if( isSwipePrevented( event.target ) ) return true;
// Each touch should only trigger one action
if( !touch.captured ) {
onUserInput( event );
var currentX = event.touches[0].clientX;
var currentY = event.touches[0].clientY;
// If the touch started with two points and still has
// two active touches; test for the pinch gesture
if( event.touches.length === 2 && touch.startCount === 2 && config.overview ) {
// The current distance in pixels between the two touch points
var currentSpan = distanceBetween( {
x: event.touches[1].clientX,
y: event.touches[1].clientY
}, {
x: touch.startX,
y: touch.startY
} );
// If the span is larger than the desire amount we've got
// ourselves a pinch
if( Math.abs( touch.startSpan - currentSpan ) > touch.threshold ) {
touch.captured = true;
if( currentSpan < touch.startSpan ) {
activateOverview();
}
else {
deactivateOverview();
}
}
event.preventDefault();
}
// There was only one touch point, look for a swipe
else if( event.touches.length === 1 && touch.startCount !== 2 ) {
var deltaX = currentX - touch.startX,
deltaY = currentY - touch.startY;
if( deltaX > touch.threshold && Math.abs( deltaX ) > Math.abs( deltaY ) ) {
touch.captured = true;
navigateLeft();
}
else if( deltaX < -touch.threshold && Math.abs( deltaX ) > Math.abs( deltaY ) ) {
touch.captured = true;
navigateRight();
}
else if( deltaY > touch.threshold ) {
touch.captured = true;
navigateUp();
}
else if( deltaY < -touch.threshold ) {
touch.captured = true;
navigateDown();
}
// If we're embedded, only block touch events if they have
// triggered an action
if( config.embedded ) {
if( touch.captured || isVerticalSlide( currentSlide ) ) {
event.preventDefault();
}
}
// Not embedded? Block them all to avoid needless tossing
// around of the viewport in iOS
else {
event.preventDefault();
}
}
}
// There's a bug with swiping on some Android devices unless
// the default action is always prevented
else if( UA.match( /android/gi ) ) {
event.preventDefault();
}
}
/**
* Handler for the 'touchend' event.
*
* @param {object} event
*/
function onTouchEnd( event ) {
touch.captured = false;
}
/**
* Convert pointer down to touch start.
*
* @param {object} event
*/
function onPointerDown( event ) {
if( event.pointerType === event.MSPOINTER_TYPE_TOUCH || event.pointerType === "touch" ) {
event.touches = [{ clientX: event.clientX, clientY: event.clientY }];
onTouchStart( event );
}
}
/**
* Convert pointer move to touch move.
*
* @param {object} event
*/
function onPointerMove( event ) {
if( event.pointerType === event.MSPOINTER_TYPE_TOUCH || event.pointerType === "touch" ) {
event.touches = [{ clientX: event.clientX, clientY: event.clientY }];
onTouchMove( event );
}
}
/**
* Convert pointer up to touch end.
*
* @param {object} event
*/
function onPointerUp( event ) {
if( event.pointerType === event.MSPOINTER_TYPE_TOUCH || event.pointerType === "touch" ) {
event.touches = [{ clientX: event.clientX, clientY: event.clientY }];
onTouchEnd( event );
}
}
/**
* Handles mouse wheel scrolling, throttled to avoid skipping
* multiple slides.
*
* @param {object} event
*/
function onDocumentMouseScroll( event ) {
if( Date.now() - lastMouseWheelStep > 600 ) {
lastMouseWheelStep = Date.now();
var delta = event.detail || -event.wheelDelta;
if( delta > 0 ) {
navigateNext();
}
else if( delta < 0 ) {
navigatePrev();
}
}
}
/**
* Clicking on the progress bar results in a navigation to the
* closest approximate horizontal slide using this equation:
*
* ( clickX / presentationWidth ) * numberOfSlides
*
* @param {object} event
*/
function onProgressClicked( event ) {
onUserInput( event );
event.preventDefault();
var slidesTotal = toArray( dom.wrapper.querySelectorAll( HORIZONTAL_SLIDES_SELECTOR ) ).length;
var slideIndex = Math.floor( ( event.clientX / dom.wrapper.offsetWidth ) * slidesTotal );
if( config.rtl ) {
slideIndex = slidesTotal - slideIndex;
}
slide( slideIndex );
}
/**
* Event handler for navigation control buttons.
*/
function onNavigateLeftClicked( event ) { event.preventDefault(); onUserInput(); navigateLeft(); }
function onNavigateRightClicked( event ) { event.preventDefault(); onUserInput(); navigateRight(); }
function onNavigateUpClicked( event ) { event.preventDefault(); onUserInput(); navigateUp(); }
function onNavigateDownClicked( event ) { event.preventDefault(); onUserInput(); navigateDown(); }
function onNavigatePrevClicked( event ) { event.preventDefault(); onUserInput(); navigatePrev(); }
function onNavigateNextClicked( event ) { event.preventDefault(); onUserInput(); navigateNext(); }
/**
* Handler for the window level 'hashchange' event.
*
* @param {object} [event]
*/
function onWindowHashChange( event ) {
readURL();
}
/**
* Handler for the window level 'resize' event.
*
* @param {object} [event]
*/
function onWindowResize( event ) {
layout();
}
/**
* Handle for the window level 'visibilitychange' event.
*
* @param {object} [event]
*/
function onPageVisibilityChange( event ) {
var isHidden = document.webkitHidden ||
document.msHidden ||
document.hidden;
// If, after clicking a link or similar and we're coming back,
// focus the document.body to ensure we can use keyboard shortcuts
if( isHidden === false && document.activeElement !== document.body ) {
// Not all elements support .blur() - SVGs among them.
if( typeof document.activeElement.blur === 'function' ) {
document.activeElement.blur();
}
document.body.focus();
}
}
/**
* Invoked when a slide is and we're in the overview.
*
* @param {object} event
*/
function onOverviewSlideClicked( event ) {
// TODO There's a bug here where the event listeners are not
// removed after deactivating the overview.
if( eventsAreBound && isOverview() ) {
event.preventDefault();
var element = event.target;
while( element && !element.nodeName.match( /section/gi ) ) {
element = element.parentNode;
}
if( element && !element.classList.contains( 'disabled' ) ) {
deactivateOverview();
if( element.nodeName.match( /section/gi ) ) {
var h = parseInt( element.getAttribute( 'data-index-h' ), 10 ),
v = parseInt( element.getAttribute( 'data-index-v' ), 10 );
slide( h, v );
}
}
}
}
/**
* Handles clicks on links that are set to preview in the
* iframe overlay.
*
* @param {object} event
*/
function onPreviewLinkClicked( event ) {
if( event.currentTarget && event.currentTarget.hasAttribute( 'href' ) ) {
var url = event.currentTarget.getAttribute( 'href' );
if( url ) {
showPreview( url );
event.preventDefault();
}
}
}
/**
* Handles click on the auto-sliding controls element.
*
* @param {object} [event]
*/
function onAutoSlidePlayerClick( event ) {
// Replay
if( Reveal.isLastSlide() && config.loop === false ) {
slide( 0, 0 );
resumeAutoSlide();
}
// Resume
else if( autoSlidePaused ) {
resumeAutoSlide();
}
// Pause
else {
pauseAutoSlide();
}
}
// --------------------------------------------------------------------//
// ------------------------ PLAYBACK COMPONENT ------------------------//
// --------------------------------------------------------------------//
/**
* Constructor for the playback component, which displays
* play/pause/progress controls.
*
* @param {HTMLElement} container The component will append
* itself to this
* @param {function} progressCheck A method which will be
* called frequently to get the current progress on a range
* of 0-1
*/
function Playback( container, progressCheck ) {
// Cosmetics
this.diameter = 100;
this.diameter2 = this.diameter/2;
this.thickness = 6;
// Flags if we are currently playing
this.playing = false;
// Current progress on a 0-1 range
this.progress = 0;
// Used to loop the animation smoothly
this.progressOffset = 1;
this.container = container;
this.progressCheck = progressCheck;
this.canvas = document.createElement( 'canvas' );
this.canvas.className = 'playback';
this.canvas.width = this.diameter;
this.canvas.height = this.diameter;
this.canvas.style.width = this.diameter2 + 'px';
this.canvas.style.height = this.diameter2 + 'px';
this.context = this.canvas.getContext( '2d' );
this.container.appendChild( this.canvas );
this.render();
}
/**
* @param value
*/
Playback.prototype.setPlaying = function( value ) {
var wasPlaying = this.playing;
this.playing = value;
// Start repainting if we weren't already
if( !wasPlaying && this.playing ) {
this.animate();
}
else {
this.render();
}
};
Playback.prototype.animate = function() {
var progressBefore = this.progress;
this.progress = this.progressCheck();
// When we loop, offset the progress so that it eases
// smoothly rather than immediately resetting
if( progressBefore > 0.8 && this.progress < 0.2 ) {
this.progressOffset = this.progress;
}
this.render();
if( this.playing ) {
features.requestAnimationFrameMethod.call( window, this.animate.bind( this ) );
}
};
/**
* Renders the current progress and playback state.
*/
Playback.prototype.render = function() {
var progress = this.playing ? this.progress : 0,
radius = ( this.diameter2 ) - this.thickness,
x = this.diameter2,
y = this.diameter2,
iconSize = 28;
// Ease towards 1
this.progressOffset += ( 1 - this.progressOffset ) * 0.1;
var endAngle = ( - Math.PI / 2 ) + ( progress * ( Math.PI * 2 ) );
var startAngle = ( - Math.PI / 2 ) + ( this.progressOffset * ( Math.PI * 2 ) );
this.context.save();
this.context.clearRect( 0, 0, this.diameter, this.diameter );
// Solid background color
this.context.beginPath();
this.context.arc( x, y, radius + 4, 0, Math.PI * 2, false );
this.context.fillStyle = 'rgba( 0, 0, 0, 0.4 )';
this.context.fill();
// Draw progress track
this.context.beginPath();
this.context.arc( x, y, radius, 0, Math.PI * 2, false );
this.context.lineWidth = this.thickness;
this.context.strokeStyle = 'rgba( 255, 255, 255, 0.2 )';
this.context.stroke();
if( this.playing ) {
// Draw progress on top of track
this.context.beginPath();
this.context.arc( x, y, radius, startAngle, endAngle, false );
this.context.lineWidth = this.thickness;
this.context.strokeStyle = '#fff';
this.context.stroke();
}
this.context.translate( x - ( iconSize / 2 ), y - ( iconSize / 2 ) );
// Draw play/pause icons
if( this.playing ) {
this.context.fillStyle = '#fff';
this.context.fillRect( 0, 0, iconSize / 2 - 4, iconSize );
this.context.fillRect( iconSize / 2 + 4, 0, iconSize / 2 - 4, iconSize );
}
else {
this.context.beginPath();
this.context.translate( 4, 0 );
this.context.moveTo( 0, 0 );
this.context.lineTo( iconSize - 4, iconSize / 2 );
this.context.lineTo( 0, iconSize );
this.context.fillStyle = '#fff';
this.context.fill();
}
this.context.restore();
};
Playback.prototype.on = function( type, listener ) {
this.canvas.addEventListener( type, listener, false );
};
Playback.prototype.off = function( type, listener ) {
this.canvas.removeEventListener( type, listener, false );
};
Playback.prototype.destroy = function() {
this.playing = false;
if( this.canvas.parentNode ) {
this.container.removeChild( this.canvas );
}
};
// --------------------------------------------------------------------//
// ------------------------------- API --------------------------------//
// --------------------------------------------------------------------//
Reveal = {
VERSION: VERSION,
initialize: initialize,
configure: configure,
sync: sync,
// Navigation methods
slide: slide,
left: navigateLeft,
right: navigateRight,
up: navigateUp,
down: navigateDown,
prev: navigatePrev,
next: navigateNext,
// Fragment methods
navigateFragment: navigateFragment,
prevFragment: previousFragment,
nextFragment: nextFragment,
// Deprecated aliases
navigateTo: slide,
navigateLeft: navigateLeft,
navigateRight: navigateRight,
navigateUp: navigateUp,
navigateDown: navigateDown,
navigatePrev: navigatePrev,
navigateNext: navigateNext,
// Forces an update in slide layout
layout: layout,
// Randomizes the order of slides
shuffle: shuffle,
// Returns an object with the available routes as booleans (left/right/top/bottom)
availableRoutes: availableRoutes,
// Returns an object with the available fragments as booleans (prev/next)
availableFragments: availableFragments,
// Toggles a help overlay with keyboard shortcuts
toggleHelp: toggleHelp,
// Toggles the overview mode on/off
toggleOverview: toggleOverview,
// Toggles the "black screen" mode on/off
togglePause: togglePause,
// Toggles the auto slide mode on/off
toggleAutoSlide: toggleAutoSlide,
// State checks
isOverview: isOverview,
isPaused: isPaused,
isAutoSliding: isAutoSliding,
isSpeakerNotes: isSpeakerNotes,
// Slide preloading
loadSlide: loadSlide,
unloadSlide: unloadSlide,
// Adds or removes all internal event listeners (such as keyboard)
addEventListeners: addEventListeners,
removeEventListeners: removeEventListeners,
// Facility for persisting and restoring the presentation state
getState: getState,
setState: setState,
// Presentation progress
getSlidePastCount: getSlidePastCount,
// Presentation progress on range of 0-1
getProgress: getProgress,
// Returns the indices of the current, or specified, slide
getIndices: getIndices,
// Returns an Array of all slides
getSlides: getSlides,
// Returns the total number of slides
getTotalSlides: getTotalSlides,
// Returns the slide element at the specified index
getSlide: getSlide,
// Returns the slide background element at the specified index
getSlideBackground: getSlideBackground,
// Returns the speaker notes string for a slide, or null
getSlideNotes: getSlideNotes,
// Returns the previous slide element, may be null
getPreviousSlide: function() {
return previousSlide;
},
// Returns the current slide element
getCurrentSlide: function() {
return currentSlide;
},
// Returns the current scale of the presentation content
getScale: function() {
return scale;
},
// Returns the current configuration object
getConfig: function() {
return config;
},
// Helper method, retrieves query string as a key/value hash
getQueryHash: function() {
var query = {};
location.search.replace( /[A-Z0-9]+?=([\w\.%-]*)/gi, function(a) {
query[ a.split( '=' ).shift() ] = a.split( '=' ).pop();
} );
// Basic deserialization
for( var i in query ) {
var value = query[ i ];
query[ i ] = deserialize( unescape( value ) );
}
return query;
},
// Returns true if we're currently on the first slide
isFirstSlide: function() {
return ( indexh === 0 && indexv === 0 );
},
// Returns true if we're currently on the last slide
isLastSlide: function() {
if( currentSlide ) {
// Does this slide has next a sibling?
if( currentSlide.nextElementSibling ) return false;
// If it's vertical, does its parent have a next sibling?
if( isVerticalSlide( currentSlide ) && currentSlide.parentNode.nextElementSibling ) return false;
return true;
}
return false;
},
// Checks if reveal.js has been loaded and is ready for use
isReady: function() {
return loaded;
},
// Forward event binding to the reveal DOM element
addEventListener: function( type, listener, useCapture ) {
if( 'addEventListener' in window ) {
( dom.wrapper || document.querySelector( '.reveal' ) ).addEventListener( type, listener, useCapture );
}
},
removeEventListener: function( type, listener, useCapture ) {
if( 'addEventListener' in window ) {
( dom.wrapper || document.querySelector( '.reveal' ) ).removeEventListener( type, listener, useCapture );
}
},
// Programatically triggers a keyboard event
triggerKey: function( keyCode ) {
onDocumentKeyDown( { keyCode: keyCode } );
},
// Registers a new shortcut to include in the help overlay
registerKeyboardShortcut: function( key, value ) {
keyboardShortcuts[key] = value;
}
};
return Reveal;
}));
</script>
<script>
// Full list of configuration options available at:
// https://github.com/hakimel/reveal.js#configuration
Reveal.initialize({
// Display the page number of the current slide
slideNumber: true,
// Push each slide change to the browser history
history: true,
// The "normal" size of the presentation, aspect ratio will be preserved
// when the presentation is scaled to fit different resolutions. Can be
// specified using percentage units.
width: 1920,
height: 1080,
// Factor of the display size that should remain empty around the content
margin: 0.2,
// Optional reveal.js plugins
dependencies: [
{ src: 'reveal.js/lib/js/classList.js', condition: function() { return !document.body.classList; } },
{ src: 'reveal.js/plugin/zoom-js/zoom.js', async: true },
{ src: 'reveal.js/plugin/notes/notes.js', async: true }
]
});
</script>
</body>
</html>