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<!DOCTYPE html>
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<html>
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||||||
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<head>
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||||||
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<meta charset='utf-8'>
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||||||
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<meta http-equiv="X-UA-Compatible" content="chrome=1">
|
||||||
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|
||||||
|
<link rel="stylesheet" type="text/css" href="stylesheets/stylesheet.css" media="screen">
|
||||||
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<link rel="stylesheet" type="text/css" href="stylesheets/github-dark.css" media="screen">
|
||||||
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<link rel="stylesheet" type="text/css" href="stylesheets/print.css" media="print">
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||||||
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||||||
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<title>Bash-oneliner by onceupon</title>
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||||||
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</head>
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||||||
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||||||
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<body>
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||||||
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||||||
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<header>
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||||||
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<div class="container">
|
||||||
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<h1>Bash-oneliner</h1>
|
||||||
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<h2>Bash Oneliner learning station. This blog will focus on bash commands for parsing biological data, which are tsv files(tab-separated values); some of the commands are for Ubuntu system maintaining. I apologize that there won't be any citation of the code, but they are probably from dear Google and Stackoverflow. Not all the code here are oneliner (if the ';' counts..). English and bash are not my first language, so... correct me anytime, tks!!</h2>
|
||||||
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|
||||||
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<section id="downloads">
|
||||||
|
<a href="https://github.com/onceupon/Bash-Oneliner/zipball/master" class="btn">Download as .zip</a>
|
||||||
|
<a href="https://github.com/onceupon/Bash-Oneliner/tarball/master" class="btn">Download as .tar.gz</a>
|
||||||
|
<a href="https://github.com/onceupon/Bash-Oneliner" class="btn btn-github"><span class="icon"></span>View on GitHub</a>
|
||||||
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</section>
|
||||||
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</div>
|
||||||
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</header>
|
||||||
|
|
||||||
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<div class="container">
|
||||||
|
<section id="main_content">
|
||||||
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<h3>
|
||||||
|
<a id="welcome-to-github-pages" class="anchor" href="#welcome-to-github-pages" aria-hidden="true"><span aria-hidden="true" class="octicon octicon-link"></span></a>Welcome to GitHub Pages.</h3>
|
||||||
|
|
||||||
|
<p>This automatic page generator is the easiest way to create beautiful pages for all of your projects. Author your page content here <a href="https://guides.github.com/features/mastering-markdown/">using GitHub Flavored Markdown</a>, select a template crafted by a designer, and publish. After your page is generated, you can check out the new <code>gh-pages</code> branch locally. If you’re using GitHub Desktop, simply sync your repository and you’ll see the new branch.</p>
|
||||||
|
|
||||||
|
<h3>
|
||||||
|
<a id="designer-templates" class="anchor" href="#designer-templates" aria-hidden="true"><span aria-hidden="true" class="octicon octicon-link"></span></a>Designer Templates</h3>
|
||||||
|
|
||||||
|
<p>We’ve crafted some handsome templates for you to use. Go ahead and click 'Continue to layouts' to browse through them. You can easily go back to edit your page before publishing. After publishing your page, you can revisit the page generator and switch to another theme. Your Page content will be preserved.</p>
|
||||||
|
|
||||||
|
<h3>
|
||||||
|
<a id="creating-pages-manually" class="anchor" href="#creating-pages-manually" aria-hidden="true"><span aria-hidden="true" class="octicon octicon-link"></span></a>Creating pages manually</h3>
|
||||||
|
|
||||||
|
<p>If you prefer to not use the automatic generator, push a branch named <code>gh-pages</code> to your repository to create a page manually. In addition to supporting regular HTML content, GitHub Pages support Jekyll, a simple, blog aware static site generator. Jekyll makes it easy to create site-wide headers and footers without having to copy them across every page. It also offers intelligent blog support and other advanced templating features.</p>
|
||||||
|
|
||||||
|
<h3>
|
||||||
|
<a id="authors-and-contributors" class="anchor" href="#authors-and-contributors" aria-hidden="true"><span aria-hidden="true" class="octicon octicon-link"></span></a>Authors and Contributors</h3>
|
||||||
|
|
||||||
|
<p>You can <a href="https://help.github.com/articles/basic-writing-and-formatting-syntax/#mentioning-users-and-teams" class="user-mention">@mention</a> a GitHub username to generate a link to their profile. The resulting <code><a></code> element will link to the contributor’s GitHub Profile. For example: In 2007, Chris Wanstrath (<a href="https://github.com/defunkt" class="user-mention">@defunkt</a>), PJ Hyett (<a href="https://github.com/pjhyett" class="user-mention">@pjhyett</a>), and Tom Preston-Werner (<a href="https://github.com/mojombo" class="user-mention">@mojombo</a>) founded GitHub.</p>
|
||||||
|
|
||||||
|
<h3>
|
||||||
|
<a id="support-or-contact" class="anchor" href="#support-or-contact" aria-hidden="true"><span aria-hidden="true" class="octicon octicon-link"></span></a>Support or Contact</h3>
|
||||||
|
|
||||||
|
<p>Having trouble with Pages? Check out our <a href="https://help.github.com/pages">documentation</a> or <a href="https://github.com/contact">contact support</a> and we’ll help you sort it out.</p>
|
||||||
|
</section>
|
||||||
|
</div>
|
||||||
|
|
||||||
|
|
||||||
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</body>
|
||||||
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</html>
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||||||
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javascripts/main.js
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javascripts/main.js
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|||||||
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console.log('This would be the main JS file.');
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||||||
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params.json
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params.json
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|
|||||||
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{
|
||||||
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"name": "Bash-oneliner",
|
||||||
|
"tagline": "Bash Oneliner learning station. This blog will focus on bash commands for parsing biological data, which are tsv files(tab-separated values); some of the commands are for Ubuntu system maintaining. I apologize that there won't be any citation of the code, but they are probably from dear Google and Stackoverflow. Not all the code here are oneliner (if the ';' counts..). English and bash are not my first language, so... correct me anytime, tks!!",
|
||||||
|
"body": "### Welcome to GitHub Pages.\r\nThis automatic page generator is the easiest way to create beautiful pages for all of your projects. Author your page content here [using GitHub Flavored Markdown](https://guides.github.com/features/mastering-markdown/), select a template crafted by a designer, and publish. After your page is generated, you can check out the new `gh-pages` branch locally. If you’re using GitHub Desktop, simply sync your repository and you’ll see the new branch.\r\n\r\n### Designer Templates\r\nWe’ve crafted some handsome templates for you to use. Go ahead and click 'Continue to layouts' to browse through them. You can easily go back to edit your page before publishing. After publishing your page, you can revisit the page generator and switch to another theme. Your Page content will be preserved.\r\n\r\n### Creating pages manually\r\nIf you prefer to not use the automatic generator, push a branch named `gh-pages` to your repository to create a page manually. In addition to supporting regular HTML content, GitHub Pages support Jekyll, a simple, blog aware static site generator. Jekyll makes it easy to create site-wide headers and footers without having to copy them across every page. It also offers intelligent blog support and other advanced templating features.\r\n\r\n### Authors and Contributors\r\nYou can @mention a GitHub username to generate a link to their profile. The resulting `<a>` element will link to the contributor’s GitHub Profile. For example: In 2007, Chris Wanstrath (@defunkt), PJ Hyett (@pjhyett), and Tom Preston-Werner (@mojombo) founded GitHub.\r\n\r\n### Support or Contact\r\nHaving trouble with Pages? Check out our [documentation](https://help.github.com/pages) or [contact support](https://github.com/contact) and we’ll help you sort it out.\r\n",
|
||||||
|
"note": "Don't delete this file! It's used internally to help with page regeneration."
|
||||||
|
}
|
||||||
124
stylesheets/github-dark.css
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stylesheets/github-dark.css
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|||||||
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/*
|
||||||
|
The MIT License (MIT)
|
||||||
|
|
||||||
|
Copyright (c) 2016 GitHub, Inc.
|
||||||
|
|
||||||
|
Permission is hereby granted, free of charge, to any person obtaining a copy
|
||||||
|
of this software and associated documentation files (the "Software"), to deal
|
||||||
|
in the Software without restriction, including without limitation the rights
|
||||||
|
to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
|
||||||
|
copies of the Software, and to permit persons to whom the Software is
|
||||||
|
furnished to do so, subject to the following conditions:
|
||||||
|
|
||||||
|
The above copyright notice and this permission notice shall be included in all
|
||||||
|
copies or substantial portions of the Software.
|
||||||
|
|
||||||
|
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
|
||||||
|
IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
|
||||||
|
FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
|
||||||
|
AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
|
||||||
|
LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
|
||||||
|
OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
|
||||||
|
SOFTWARE.
|
||||||
|
|
||||||
|
*/
|
||||||
|
|
||||||
|
.pl-c /* comment */ {
|
||||||
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color: #969896;
|
||||||
|
}
|
||||||
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|
||||||
|
.pl-c1 /* constant, variable.other.constant, support, meta.property-name, support.constant, support.variable, meta.module-reference, markup.raw, meta.diff.header */,
|
||||||
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.pl-s .pl-v /* string variable */ {
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||||||
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color: #0099cd;
|
||||||
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}
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||||||
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||||||
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.pl-e /* entity */,
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||||||
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.pl-en /* entity.name */ {
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||||||
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color: #9774cb;
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||||||
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}
|
||||||
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|
||||||
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.pl-smi /* variable.parameter.function, storage.modifier.package, storage.modifier.import, storage.type.java, variable.other */,
|
||||||
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.pl-s .pl-s1 /* string source */ {
|
||||||
|
color: #ddd;
|
||||||
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}
|
||||||
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|
||||||
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.pl-ent /* entity.name.tag */ {
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||||||
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color: #7bcc72;
|
||||||
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}
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||||||
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|
||||||
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.pl-k /* keyword, storage, storage.type */ {
|
||||||
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color: #cc2372;
|
||||||
|
}
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||||||
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||||||
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.pl-s /* string */,
|
||||||
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.pl-pds /* punctuation.definition.string, string.regexp.character-class */,
|
||||||
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.pl-s .pl-pse .pl-s1 /* string punctuation.section.embedded source */,
|
||||||
|
.pl-sr /* string.regexp */,
|
||||||
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.pl-sr .pl-cce /* string.regexp constant.character.escape */,
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||||||
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.pl-sr .pl-sre /* string.regexp source.ruby.embedded */,
|
||||||
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.pl-sr .pl-sra /* string.regexp string.regexp.arbitrary-repitition */ {
|
||||||
|
color: #3c66e2;
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||||||
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}
|
||||||
|
|
||||||
|
.pl-v /* variable */ {
|
||||||
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color: #fb8764;
|
||||||
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}
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||||||
|
|
||||||
|
.pl-id /* invalid.deprecated */ {
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||||||
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color: #e63525;
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||||||
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}
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||||||
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|
||||||
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.pl-ii /* invalid.illegal */ {
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||||||
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color: #f8f8f8;
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||||||
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background-color: #e63525;
|
||||||
|
}
|
||||||
|
|
||||||
|
.pl-sr .pl-cce /* string.regexp constant.character.escape */ {
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||||||
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font-weight: bold;
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||||||
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color: #7bcc72;
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||||||
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}
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||||||
|
|
||||||
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.pl-ml /* markup.list */ {
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||||||
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color: #c26b2b;
|
||||||
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}
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||||||
|
|
||||||
|
.pl-mh /* markup.heading */,
|
||||||
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.pl-mh .pl-en /* markup.heading entity.name */,
|
||||||
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.pl-ms /* meta.separator */ {
|
||||||
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font-weight: bold;
|
||||||
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color: #264ec5;
|
||||||
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}
|
||||||
|
|
||||||
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.pl-mq /* markup.quote */ {
|
||||||
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color: #00acac;
|
||||||
|
}
|
||||||
|
|
||||||
|
.pl-mi /* markup.italic */ {
|
||||||
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font-style: italic;
|
||||||
|
color: #ddd;
|
||||||
|
}
|
||||||
|
|
||||||
|
.pl-mb /* markup.bold */ {
|
||||||
|
font-weight: bold;
|
||||||
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color: #ddd;
|
||||||
|
}
|
||||||
|
|
||||||
|
.pl-md /* markup.deleted, meta.diff.header.from-file */ {
|
||||||
|
color: #bd2c00;
|
||||||
|
background-color: #ffecec;
|
||||||
|
}
|
||||||
|
|
||||||
|
.pl-mi1 /* markup.inserted, meta.diff.header.to-file */ {
|
||||||
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color: #55a532;
|
||||||
|
background-color: #eaffea;
|
||||||
|
}
|
||||||
|
|
||||||
|
.pl-mdr /* meta.diff.range */ {
|
||||||
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font-weight: bold;
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||||||
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color: #9774cb;
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||||||
|
}
|
||||||
|
|
||||||
|
.pl-mo /* meta.output */ {
|
||||||
|
color: #264ec5;
|
||||||
|
}
|
||||||
|
|
||||||
247
stylesheets/stylesheet.css
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stylesheets/stylesheet.css
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|
|||||||
|
body {
|
||||||
|
margin: 0;
|
||||||
|
padding: 0;
|
||||||
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background: #151515 url("../images/bkg.png") 0 0;
|
||||||
|
color: #eaeaea;
|
||||||
|
font: 16px;
|
||||||
|
line-height: 1.5;
|
||||||
|
font-family: Monaco, "Bitstream Vera Sans Mono", "Lucida Console", Terminal, monospace;
|
||||||
|
}
|
||||||
|
|
||||||
|
/* General & 'Reset' Stuff */
|
||||||
|
|
||||||
|
.container {
|
||||||
|
width: 90%;
|
||||||
|
max-width: 600px;
|
||||||
|
margin: 0 auto;
|
||||||
|
}
|
||||||
|
|
||||||
|
section {
|
||||||
|
display: block;
|
||||||
|
margin: 0 0 20px 0;
|
||||||
|
}
|
||||||
|
|
||||||
|
h1, h2, h3, h4, h5, h6 {
|
||||||
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margin: 0 0 20px;
|
||||||
|
}
|
||||||
|
|
||||||
|
li {
|
||||||
|
line-height: 1.4 ;
|
||||||
|
}
|
||||||
|
|
||||||
|
/* Header, <header>
|
||||||
|
header - container
|
||||||
|
h1 - project name
|
||||||
|
h2 - project description
|
||||||
|
*/
|
||||||
|
|
||||||
|
header {
|
||||||
|
background: rgba(0, 0, 0, 0.1);
|
||||||
|
width: 100%;
|
||||||
|
border-bottom: 1px dashed #b5e853;
|
||||||
|
padding: 20px 0;
|
||||||
|
margin: 0 0 40px 0;
|
||||||
|
}
|
||||||
|
|
||||||
|
header h1 {
|
||||||
|
font-size: 30px;
|
||||||
|
line-height: 1.5;
|
||||||
|
margin: 0 0 0 -40px;
|
||||||
|
font-weight: bold;
|
||||||
|
font-family: Monaco, "Bitstream Vera Sans Mono", "Lucida Console", Terminal, monospace;
|
||||||
|
color: #b5e853;
|
||||||
|
text-shadow: 0 1px 1px rgba(0, 0, 0, 0.1),
|
||||||
|
0 0 5px rgba(181, 232, 83, 0.1),
|
||||||
|
0 0 10px rgba(181, 232, 83, 0.1);
|
||||||
|
letter-spacing: -1px;
|
||||||
|
-webkit-font-smoothing: antialiased;
|
||||||
|
}
|
||||||
|
|
||||||
|
header h1:before {
|
||||||
|
content: "./ ";
|
||||||
|
font-size: 24px;
|
||||||
|
}
|
||||||
|
|
||||||
|
header h2 {
|
||||||
|
font-size: 18px;
|
||||||
|
font-weight: 300;
|
||||||
|
color: #666;
|
||||||
|
}
|
||||||
|
|
||||||
|
#downloads .btn {
|
||||||
|
display: inline-block;
|
||||||
|
text-align: center;
|
||||||
|
margin: 0;
|
||||||
|
}
|
||||||
|
|
||||||
|
/* Main Content
|
||||||
|
*/
|
||||||
|
|
||||||
|
#main_content {
|
||||||
|
width: 100%;
|
||||||
|
-webkit-font-smoothing: antialiased;
|
||||||
|
}
|
||||||
|
section img {
|
||||||
|
max-width: 100%
|
||||||
|
}
|
||||||
|
|
||||||
|
h1, h2, h3, h4, h5, h6 {
|
||||||
|
font-weight: normal;
|
||||||
|
font-family: Monaco, "Bitstream Vera Sans Mono", "Lucida Console", Terminal, monospace;
|
||||||
|
color: #b5e853;
|
||||||
|
letter-spacing: -0.03em;
|
||||||
|
text-shadow: 0 1px 1px rgba(0, 0, 0, 0.1),
|
||||||
|
0 0 5px rgba(181, 232, 83, 0.1),
|
||||||
|
0 0 10px rgba(181, 232, 83, 0.1);
|
||||||
|
}
|
||||||
|
|
||||||
|
#main_content h1 {
|
||||||
|
font-size: 30px;
|
||||||
|
}
|
||||||
|
|
||||||
|
#main_content h2 {
|
||||||
|
font-size: 24px;
|
||||||
|
}
|
||||||
|
|
||||||
|
#main_content h3 {
|
||||||
|
font-size: 18px;
|
||||||
|
}
|
||||||
|
|
||||||
|
#main_content h4 {
|
||||||
|
font-size: 14px;
|
||||||
|
}
|
||||||
|
|
||||||
|
#main_content h5 {
|
||||||
|
font-size: 12px;
|
||||||
|
text-transform: uppercase;
|
||||||
|
margin: 0 0 5px 0;
|
||||||
|
}
|
||||||
|
|
||||||
|
#main_content h6 {
|
||||||
|
font-size: 12px;
|
||||||
|
text-transform: uppercase;
|
||||||
|
color: #999;
|
||||||
|
margin: 0 0 5px 0;
|
||||||
|
}
|
||||||
|
|
||||||
|
dt {
|
||||||
|
font-style: italic;
|
||||||
|
font-weight: bold;
|
||||||
|
}
|
||||||
|
|
||||||
|
ul li {
|
||||||
|
list-style: none;
|
||||||
|
}
|
||||||
|
|
||||||
|
ul li:before {
|
||||||
|
content: ">>";
|
||||||
|
font-family: Monaco, "Bitstream Vera Sans Mono", "Lucida Console", Terminal, monospace;
|
||||||
|
font-size: 13px;
|
||||||
|
color: #b5e853;
|
||||||
|
margin-left: -37px;
|
||||||
|
margin-right: 21px;
|
||||||
|
line-height: 16px;
|
||||||
|
}
|
||||||
|
|
||||||
|
blockquote {
|
||||||
|
color: #aaa;
|
||||||
|
padding-left: 10px;
|
||||||
|
border-left: 1px dotted #666;
|
||||||
|
}
|
||||||
|
|
||||||
|
pre {
|
||||||
|
background: rgba(0, 0, 0, 0.9);
|
||||||
|
border: 1px solid rgba(255, 255, 255, 0.15);
|
||||||
|
padding: 10px;
|
||||||
|
font-size: 14px;
|
||||||
|
color: #b5e853;
|
||||||
|
border-radius: 2px;
|
||||||
|
-moz-border-radius: 2px;
|
||||||
|
-webkit-border-radius: 2px;
|
||||||
|
text-wrap: normal;
|
||||||
|
overflow: auto;
|
||||||
|
overflow-y: hidden;
|
||||||
|
}
|
||||||
|
|
||||||
|
table {
|
||||||
|
width: 100%;
|
||||||
|
margin: 0 0 20px 0;
|
||||||
|
}
|
||||||
|
|
||||||
|
th {
|
||||||
|
text-align: left;
|
||||||
|
border-bottom: 1px dashed #b5e853;
|
||||||
|
padding: 5px 10px;
|
||||||
|
}
|
||||||
|
|
||||||
|
td {
|
||||||
|
padding: 5px 10px;
|
||||||
|
}
|
||||||
|
|
||||||
|
hr {
|
||||||
|
height: 0;
|
||||||
|
border: 0;
|
||||||
|
border-bottom: 1px dashed #b5e853;
|
||||||
|
color: #b5e853;
|
||||||
|
}
|
||||||
|
|
||||||
|
/* Buttons
|
||||||
|
*/
|
||||||
|
|
||||||
|
.btn {
|
||||||
|
display: inline-block;
|
||||||
|
background: -webkit-linear-gradient(top, rgba(40, 40, 40, 0.3), rgba(35, 35, 35, 0.3) 50%, rgba(10, 10, 10, 0.3) 50%, rgba(0, 0, 0, 0.3));
|
||||||
|
padding: 8px 18px;
|
||||||
|
border-radius: 50px;
|
||||||
|
border: 2px solid rgba(0, 0, 0, 0.7);
|
||||||
|
border-bottom: 2px solid rgba(0, 0, 0, 0.7);
|
||||||
|
border-top: 2px solid rgba(0, 0, 0, 1);
|
||||||
|
color: rgba(255, 255, 255, 0.8);
|
||||||
|
font-family: Helvetica, Arial, sans-serif;
|
||||||
|
font-weight: bold;
|
||||||
|
font-size: 13px;
|
||||||
|
text-decoration: none;
|
||||||
|
text-shadow: 0 -1px 0 rgba(0, 0, 0, 0.75);
|
||||||
|
box-shadow: inset 0 1px 0 rgba(255, 255, 255, 0.05);
|
||||||
|
}
|
||||||
|
|
||||||
|
.btn:hover {
|
||||||
|
background: -webkit-linear-gradient(top, rgba(40, 40, 40, 0.6), rgba(35, 35, 35, 0.6) 50%, rgba(10, 10, 10, 0.8) 50%, rgba(0, 0, 0, 0.8));
|
||||||
|
}
|
||||||
|
|
||||||
|
.btn .icon {
|
||||||
|
display: inline-block;
|
||||||
|
width: 16px;
|
||||||
|
height: 16px;
|
||||||
|
margin: 1px 8px 0 0;
|
||||||
|
float: left;
|
||||||
|
}
|
||||||
|
|
||||||
|
.btn-github .icon {
|
||||||
|
opacity: 0.6;
|
||||||
|
background: url("../images/blacktocat.png") 0 0 no-repeat;
|
||||||
|
}
|
||||||
|
|
||||||
|
/* Links
|
||||||
|
a, a:hover, a:visited
|
||||||
|
*/
|
||||||
|
|
||||||
|
a {
|
||||||
|
color: #63c0f5;
|
||||||
|
text-shadow: 0 0 5px rgba(104, 182, 255, 0.5);
|
||||||
|
}
|
||||||
|
|
||||||
|
/* Clearfix */
|
||||||
|
|
||||||
|
.cf:before, .cf:after {
|
||||||
|
content:"";
|
||||||
|
display:table;
|
||||||
|
}
|
||||||
|
|
||||||
|
.cf:after {
|
||||||
|
clear:both;
|
||||||
|
}
|
||||||
|
|
||||||
|
.cf {
|
||||||
|
zoom:1;
|
||||||
|
}
|
||||||
Loading…
Reference in New Issue
Block a user