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Update README.md
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README.md
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README.md
@ -93,6 +93,7 @@ e.g. add >$i to the first line (to make a FASTA file)
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//notice the double quotes! in other examples, you can use a single quote, but here, no way!
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//notice the double quotes! in other examples, you can use a single quote, but here, no way!
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//'1i' means insert to first line
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//'1i' means insert to first line
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delete empty lines
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delete empty lines
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sed '/^\s*$/d'
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sed '/^\s*$/d'
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@ -126,6 +127,7 @@ print every nth lines
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sed -n '0~3p' filename
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sed -n '0~3p' filename
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//catch 0: start; 3: step
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//catch 0: start; 3: step
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print every odd # lines
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print every odd # lines
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sed -n '1~2p'
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sed -n '1~2p'
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@ -139,11 +141,13 @@ remove leading whitespace and tabs
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sed -e 's/^[ \t]*//'
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sed -e 's/^[ \t]*//'
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//notice a whitespace before '\t'!!
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//notice a whitespace before '\t'!!
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remove only leading whitespace
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remove only leading whitespace
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sed 's/ *//'
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sed 's/ *//'
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//notice a whitespace before '*'!!
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//notice a whitespace before '*'!!
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remove ending commas
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remove ending commas
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sed 's/,$//g'
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sed 's/,$//g'
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@ -231,22 +235,35 @@ fileB 4 1 d
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fileB 5 2 e
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fileB 5 2 e
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and gate
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and gate
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e.g.
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e.g.
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fileA:
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fileA:
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1 0
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1 0
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2 1
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2 1
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3 1
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3 1
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4 0
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4 0
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fileB:
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fileB:
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1 0
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1 0
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2 1
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2 1
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3 0
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3 0
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4 1
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4 1
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awk -v OFS='\t' 'NR=FNR{a[$1]=$2;next} NF {print $1,((a[$1]=$2)? $2:"0")}' fileA fileB
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awk -v OFS='\t' 'NR=FNR{a[$1]=$2;next} NF {print $1,((a[$1]=$2)? $2:"0")}' fileA fileB
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1 0
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1 0
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2 1
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2 1
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3 0
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3 0
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4 0
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4 0
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round all numbers of file (e.g. 2 significant figure)
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round all numbers of file (e.g. 2 significant figure)
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@ -274,6 +291,7 @@ display 3 items per line
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//1 2 3
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//1 2 3
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4 5 6
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4 5 6
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prompt before execution
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prompt before execution
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echo a b c |xargs -p -n 3
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echo a b c |xargs -p -n 3
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@ -284,6 +302,7 @@ print command along with output
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///bin/echo abcd
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///bin/echo abcd
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//abcd
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//abcd
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with find and rm
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with find and rm
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find . -name "*.html"|xargs rm -rf
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find . -name "*.html"|xargs rm -rf
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@ -320,6 +339,7 @@ copy all files from A to B
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//v: verbose|
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//v: verbose|
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//p: keep detail (e.g. owner)
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//p: keep detail (e.g. owner)
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with sed
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with sed
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ls |xargs -n1 -I file sed -i '/^Pos/d' filename
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ls |xargs -n1 -I file sed -i '/^Pos/d' filename
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@ -341,6 +361,7 @@ count files within directories
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echo mso{1..8}|xargs -n1 bash -c 'echo -n "$1:"; ls -la "$1"| grep -w 74 |wc -l' --
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echo mso{1..8}|xargs -n1 bash -c 'echo -n "$1:"; ls -la "$1"| grep -w 74 |wc -l' --
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// "--" signals the end of options and display further option processing
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// "--" signals the end of options and display further option processing
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download dependencies files and install (e.g. requirements.txt)
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download dependencies files and install (e.g. requirements.txt)
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cat requirements.txt| xargs -n1 sudo pip install
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cat requirements.txt| xargs -n1 sudo pip install
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@ -373,6 +394,7 @@ if no subdirectory
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replace "www" "w" -- *
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replace "www" "w" -- *
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//a space before *
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//a space before *
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find and output only filename (e.g. "mso")
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find and output only filename (e.g. "mso")
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find mso*/ -name M* -printf "%f\n"
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find mso*/ -name M* -printf "%f\n"
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@ -403,17 +425,24 @@ or
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sdiff fileA fileB
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sdiff fileA fileB
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//side-to-side merge of file differences
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//side-to-side merge of file differences
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>number a file (e.g. fileA)
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number a file (e.g. fileA)
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nl fileA
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nl fileA
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or
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or
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nl -nrz fileA
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nl -nrz fileA
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//add leading zeros
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//add leading zeros
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combine/ paste two files (e.g. fileA, fileB)
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combine/ paste two files (e.g. fileA, fileB)
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paste fileA fileB
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paste fileA fileB
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//default tab seperated
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//default tab seperated
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reverse string
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reverse string
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echo 12345| rev
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echo 12345| rev
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@ -439,11 +468,13 @@ or
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(command here) 2>&1 >>outfile
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(command here) 2>&1 >>outfile
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//0: standard input; 1: standard output; 2: standard error
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//0: standard input; 1: standard output; 2: standard error
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send mail
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send mail
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echo 'heres the content'| mail -A 'file.txt' -s 'mail.subject' me@gmail.com
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echo 'heres the content'| mail -A 'file.txt' -s 'mail.subject' me@gmail.com
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//use -a flag to set send from (-a "From: some@mail.tld")
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//use -a flag to set send from (-a "From: some@mail.tld")
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.xls to csv
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.xls to csv
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xls2csv filename
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xls2csv filename
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@ -501,6 +532,7 @@ or
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!c
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!c
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//run cat filename again
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//run cat filename again
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extract .xf
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extract .xf
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1.unxz filename.tar.xz
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1.unxz filename.tar.xz
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@ -548,11 +580,13 @@ or
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Alt+Shift+#
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Alt+Shift+#
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//to make it to history
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//to make it to history
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add things to history (e.g. "addmetohistory")
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add things to history (e.g. "addmetohistory")
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#addmetodistory
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#addmetodistory
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//just add a "#" before~~
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//just add a "#" before~~
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sleep awhile or wait for a moment or schedule a job
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sleep awhile or wait for a moment or schedule a job
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sleep 5;echo hi
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sleep 5;echo hi
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@ -569,12 +603,14 @@ backup with rsync
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rsync -av --update directory directory.bak
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rsync -av --update directory directory.bak
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//skip files that are newer on receiver (i prefer this one!)
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//skip files that are newer on receiver (i prefer this one!)
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make all directories at one time!
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make all directories at one time!
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mkdir -p project/{lib/ext,bin,src,doc/{html,info,pdf},demo/stat}
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mkdir -p project/{lib/ext,bin,src,doc/{html,info,pdf},demo/stat}
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//-p: make parent directory
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//-p: make parent directory
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//this will create project/doc/html/; project/doc/info; project/lib/ext ,etc
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//this will create project/doc/html/; project/doc/info; project/lib/ext ,etc
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run command only if another command returns zero exit status (well done)
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run command only if another command returns zero exit status (well done)
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cd tmp/ && tar xvf ~/a.tar
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cd tmp/ && tar xvf ~/a.tar
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@ -594,17 +630,22 @@ use backslash "\" to break long command
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>mkdir -p tmp/a/b/c
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>mkdir -p tmp/a/b/c
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get pwd
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get pwd
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VAR=$PWD; cd ~; tar xvf -C $VAR file.tar
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VAR=$PWD; cd ~; tar xvf -C $VAR file.tar
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//PWD need to be capital letter
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//PWD need to be capital letter
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list file type of file (e.g. /tmp/)
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list file type of file (e.g. /tmp/)
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file /tmp/
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file /tmp/
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//tmp/: directory
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//tmp/: directory
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bash script
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bash script
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#!/bin/bash
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#!/bin/bash
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file=${1#*.}
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file=${1#*.}
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//remove string before a "."
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//remove string before a "."
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file=${1%.*}
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file=${1%.*}
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//remove string after a "."
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//remove string after a "."
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